View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10426_high_5 (Length: 296)
Name: NF10426_high_5
Description: NF10426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10426_high_5 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 296
Target Start/End: Complemental strand, 32266974 - 32266692
Alignment:
| Q |
15 |
cagagagttcttgtgatcttttac-aacttctctaagtgaatttaagaacctatgattagtaaacaaggtcacaaagagcacacaagtttgaagtgaatc |
113 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32266974 |
cagagagttcttgtgatcttttaccaacttctctaagtgaatttaagaacctatgattagtaaacaaggtcacaaagagcacacaagtttgcagtgaatc |
32266875 |
T |
|
| Q |
114 |
acataacttttgatcgtaacgatttaattttctattcacaaattcaaagtcaagccaagatacagtagaatacctggattttgaagcagttgatatatgc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32266874 |
acataacttttgatcgtaacgatttaattttctcttcacaaattcaaagtcaagccaagatacagtagaatacctggattttggagcagttgatatatgc |
32266775 |
T |
|
| Q |
214 |
tctacatatatctaagtatctggtgatcatgatgaaatcctgatgctacaccatactgacaagcagattctttgcaaaatata |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32266774 |
tctacatatatctaagtatctggtgatcatgatgaaatgctgatgatacaccatactgacaagcagatcctttgcaaaatata |
32266692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 27 - 212
Target Start/End: Complemental strand, 33180275 - 33180089
Alignment:
| Q |
27 |
gtgatcttttacaac-ttctctaagtgaatttaagaacctatgattagtaaacaaggtcacaaagagcacacaagtttgaagtgaatcacataacttttg |
125 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||| |||| || ||| |||||||| |||||| || |||| |||||||| || |||||||| |
|
|
| T |
33180275 |
gtgatcttttacaaagttctctaagtgaatttaagaacttatggttagcaaccaaagtcacaaaaagcacagaaatttgcagtgaatcgcacaacttttg |
33180176 |
T |
|
| Q |
126 |
atcgtaacgatttaattttctattcacaaattcaaagtcaagccaagatacagtagaatacctggattttgaagcagttgatatatg |
212 |
Q |
| |
|
| ||||| ||| |||| |||||||||||| |||||||||| |||||| |||| ||||||| || ||| ||||||| ||||||| |
|
|
| T |
33180175 |
actgtaacaattacatttattattcacaaatttaaagtcaagctaagatatagtataataccttaatcttggagcagtttatatatg |
33180089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 33180037 - 33179973
Alignment:
| Q |
226 |
taagtatctggtgatcatgatgaaatcctgatgctacaccatactgacaagcagattctttgcaa |
290 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
33180037 |
taagtatccggtgatcatgatgaaatcctgatgatagaccatactgacaagcagattctttgcaa |
33179973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University