View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10426_low_11 (Length: 239)
Name: NF10426_low_11
Description: NF10426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10426_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 10233499 - 10233725
Alignment:
| Q |
1 |
aggagcaagtgttcgaaacactcagtgggtagcgtcctgagtttatgataatggaaaaaacacatgaatcatatctgaataaacatataatactaaaaat |
100 |
Q |
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| T |
10233499 |
aggagtaagtgttcgaaacactcagtgggtagcgtcctgagtttatgataatggaaaaaacacatgaatcatatttgaataaacatataatactaaaaat |
10233598 |
T |
|
| Q |
101 |
aatgttagtaaaaaggtag----ttaaagaaacacgaaaaatccagtaaactattgaaaccttcttccttgattttgcaatacttcatcagaacaatgac |
196 |
Q |
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| T |
10233599 |
aatgttagtaaaaaggtagttaattaaagaaacacgaaaaatccagtaaactattgaaaccttcttccttgattttgcaatacttcagtagaacaatgac |
10233698 |
T |
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| Q |
197 |
tggaccagcctctttcctatcactgtt |
223 |
Q |
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| T |
10233699 |
tagaccagcctctttcctatcactgtt |
10233725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 109 - 223
Target Start/End: Original strand, 8336495 - 8336609
Alignment:
| Q |
109 |
taaaaaggtagttaaagaaacacgaaaaatccagtaaactattgaaaccttcttccttgattttgcaatacttcatcagaacaatgactggaccagcctc |
208 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8336495 |
taaaaagatagttaaagaaacacgaaaaatccagtaaactattgaaaccttcttccttgattttgcaatacttcagcagaacaatgactggaccagcctc |
8336594 |
T |
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| Q |
209 |
tttcctatcactgtt |
223 |
Q |
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| T |
8336595 |
tttcctatcactgtt |
8336609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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