View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10426_low_12 (Length: 239)
Name: NF10426_low_12
Description: NF10426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10426_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 14984681 - 14984453
Alignment:
| Q |
1 |
gttcgatgctaatggaaatagttccttactcgacgtagacaagtttgaaatcatgcatcaagttcgtattcaggctcgtgatctaaggattattgatcct |
100 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14984681 |
gttcgatgctaatggacatagttccttactcgatgtagacaagtttgaaatcatgcatcaagttcgtattcaggctcgtgatcttaggattattgatcct |
14984582 |
T |
|
| Q |
101 |
cttctctcttacccttcaactattctaagtagaaaagagtttattgttcttaactttgaggtgggactttttcaatcaccatcatcatcattatttttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14984581 |
cttctctcttacccttcaactattctaagtagaaaagagtttattgttcttaactttgaggtgggactttttcaatcaccatcatcatcattatttttct |
14984482 |
T |
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| Q |
201 |
tgttcttgcatgtttcaattagtcctttg |
229 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
14984481 |
tgttcttgcatgtttcaattagtcttttg |
14984453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 14991220 - 14991063
Alignment:
| Q |
5 |
gatgctaatggaaatagttccttactcgacgtagacaagtttgaaatcatgcatcaagttcgtattcaggctcgtgatctaaggattattgatcctcttc |
104 |
Q |
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|||||||||||| |||||||||| |||||| ||||||||| |||| |||||| ||||||||||||| | ||||||||||| |||||| |||||||||||| |
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| T |
14991220 |
gatgctaatggacatagttccttcctcgacatagacaagtatgaactcatgcgtcaagttcgtattgacgctcgtgatcttaggattcttgatcctcttc |
14991121 |
T |
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| Q |
105 |
tctcttacccttcaactattctaagtagaaaagagtttattgttcttaactttgaggt |
162 |
Q |
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||||||| ||||| | ||| | ||||| |||| |||||||||||||||| ||||| |
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| T |
14991120 |
tctcttatccttctgccatttttggtagagaagatgttattgttcttaacttggaggt |
14991063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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