View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10426_low_13 (Length: 239)
Name: NF10426_low_13
Description: NF10426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10426_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 32266542 - 32266319
Alignment:
| Q |
1 |
acatatgaaccaaattacaaataaaggtaaatctattacttataaattatacaccgacataaaatgatatgttcatttccaattgcaacatgtttcttct |
100 |
Q |
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| T |
32266542 |
acatatgaaccaaattacaaataaaggtaaatctattacttataaattatacaccaacataaaatgatatgttcatttccaattgcaacatgtttcttct |
32266443 |
T |
|
| Q |
101 |
attcatataagaaattatgtcttttcattgcttagttatcctaattcaaaacaaaattggtcttaataagacaatttcccaaacagaaggaaagctttaa |
200 |
Q |
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| T |
32266442 |
attcatataagaaattatgtcttttcattgcttagttatcctaattcaaaacaaaattggtcttaataagacaatttcccaaacagaaggaaagctttaa |
32266343 |
T |
|
| Q |
201 |
gactttcaatacagggaacaattt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
32266342 |
gactttcaatacagggaacaattt |
32266319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 32257598 - 32257551
Alignment:
| Q |
139 |
tcctaattcaaaacaaaattggtcttaataagacaatttcccaaacag |
186 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
32257598 |
tcctaattcaaaacaaaattggtcgtaataagacaattttgcaaacag |
32257551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 32257912 - 32257869
Alignment:
| Q |
102 |
ttcatataagaaattatgtcttttcattgcttagttatcctaat |
145 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
32257912 |
ttcatataagaaattatgttttttcattgcttagttctcctaat |
32257869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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