View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10426_low_15 (Length: 231)
Name: NF10426_low_15
Description: NF10426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10426_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 1124031 - 1123803
Alignment:
| Q |
1 |
ctcaattaaaagttgcctcagcttagcttcaacgttagaatggactggggaatcaaaaacccatctatcatttactgatggtcctctattaataaacctg |
100 |
Q |
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| T |
1124031 |
ctcaattaaaagttgcctcagcttagcttcaacgttagaatggactggggaatcaaaaacccatctatcatttactgatggtcctctattaataaacctg |
1123932 |
T |
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| Q |
101 |
ggaagtccacctcatgtcagccataggtgaaacaagcaatgaagaagatactaataatttgnnnnnnnaagnnnnnnnnnnnnnncaaatgactcaccca |
200 |
Q |
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| T |
1123931 |
ggaagtcaacctcatgtcagccataggtgaaacaagcaatgaagaagatactaataatttgtttttttaagaaaaaaagaaaaaacaaatgactcaccca |
1123832 |
T |
|
| Q |
201 |
ctcaaaacagattctgcaaatggcctcat |
229 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
1123831 |
ctcaaaacagattctgcaaatggcttcat |
1123803 |
T |
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