View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10426_low_3 (Length: 407)
Name: NF10426_low_3
Description: NF10426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10426_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 38272173 - 38271975
Alignment:
| Q |
14 |
aagatcttcatgttgaatgtgtctccttaaaaagtttcttactcaaactcattctcttttcaatatattaaaaggtttagttacttttagagtttcttaa |
113 |
Q |
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| T |
38272173 |
aagatcttcatgttgaatgtgtctccttaaaaagtttcttactcaaactcattctcttttcaatatattaaaaggtttagttacttttagagtttcttaa |
38272074 |
T |
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| Q |
114 |
ttt----tannnnnnnnacattctctttactatatcacacatttgatttccttcatatttttctcttgaatgatgacttaatcttaatctaatatcttg |
208 |
Q |
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| T |
38272073 |
ttttttattttttttttacattctctttactatatcacacatttgatttccttcatatttttctcttgaatgatgacttaatcttaatctaatatcttg |
38271975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 280 - 400
Target Start/End: Complemental strand, 38271913 - 38271793
Alignment:
| Q |
280 |
caataatttatttgtgtactattacatattttgttgttttcttttacttgttagttattatgatcattacgtaacatttacttgattgatctaccaatgc |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38271913 |
caataatttatttgtgtactattacatattttgttgttttcttttacttgttagttattatgatcattacgtaacatttacttgattgatctaccaatgc |
38271814 |
T |
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| Q |
380 |
tatttgtcggatacccctttg |
400 |
Q |
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| T |
38271813 |
tatttgtcggatacctctttg |
38271793 |
T |
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