View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10426_low_5 (Length: 359)
Name: NF10426_low_5
Description: NF10426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10426_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 5 - 163
Target Start/End: Original strand, 43538247 - 43538405
Alignment:
| Q |
5 |
atgaaagaaaaaataatattaaagtcagaaaccgcataaataaacggtgttgatgttgtattgtgtnnnnnnncatttacctctctacatttggatcttt |
104 |
Q |
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| T |
43538247 |
atgaaagaaaaaataatattaaagtcagaaaccacataaataaacggtgttgatgttgtattgtgtaaaaaaacatttacctctctacatttggatcttt |
43538346 |
T |
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| Q |
105 |
taacttgtgtccttatgctagcacaatgtgatctctcatgaattaaaatcaacttgtgc |
163 |
Q |
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| T |
43538347 |
taacttgtgtccttatgctagcacaatgtgatctctcatgaattaaaatcaacttgtgc |
43538405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 206 - 343
Target Start/End: Original strand, 43538448 - 43538585
Alignment:
| Q |
206 |
gtacaaaaactcttatctaacttagtcaaaaatatatttaaaataatacgaagtttgttgcaagttaaagaacaagatacatgatacaaaatagactagt |
305 |
Q |
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| T |
43538448 |
gtacaaaaactcttatctaacttagtcaaaaatatatttaaaataatacgaagtttgttgcaagttaaagaacaagatacataatacaaaatagactagt |
43538547 |
T |
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| Q |
306 |
gttgatgataagatacatgaagtggtacatagtatata |
343 |
Q |
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| T |
43538548 |
gttgatgataagatacatgaagtggttcatagtatata |
43538585 |
T |
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