View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10426_low_6 (Length: 336)

Name: NF10426_low_6
Description: NF10426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10426_low_6
NF10426_low_6
[»] chr2 (3 HSPs)
chr2 (18-335)||(16231567-16231884)
chr2 (18-328)||(34690233-34690543)
chr2 (18-328)||(34712645-34712955)
[»] chr1 (8 HSPs)
chr1 (68-241)||(38138487-38138660)
chr1 (49-234)||(7891560-7891745)
chr1 (75-130)||(43044591-43044646)
chr1 (75-130)||(43067345-43067400)
chr1 (75-130)||(3300325-3300380)
chr1 (75-130)||(43083435-43083490)
chr1 (49-127)||(40035301-40035379)
chr1 (72-130)||(43077219-43077277)
[»] chr4 (1 HSPs)
chr4 (75-130)||(4231056-4231111)
[»] chr8 (1 HSPs)
chr8 (68-115)||(4619295-4619342)
[»] chr5 (1 HSPs)
chr5 (69-115)||(16348753-16348799)


Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 16231884 - 16231567
Alignment:
Q  18 attgtgggatttcgccttacgaacaagacattgtctgataagaatcttatgcgaggctatgttgcctcaaactccaaggatgaaccagccatggaggctg 117  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  16231884 attgttggatttcgccttactaacaagacattgtctgataagaatctcatgcgaggctatgtagcctcaaactccgaggatgaaccagccatggaggctg 16231785  T
Q  118 ctaaatttacatcccgcgttataatcattaatcacccgtcggtgattacgaaaggatatactcctatcctcgactgccacacttcacacgttgctgtcaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16231784 ctaaatttacatcccgcgttataatcattaatcacccgtcggtgattacgaaaggatatactcctatcctcgactgccacacttcacacgttgctgtcaa 16231685  T
Q  218 atttgctaagctggttacaaagttcgatagagaaaccggagtggaattagagaaaaaaccgaagtccttgaagaatggtgatgcaggaattgttaagatg 317  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16231684 atttgctaagctggctacaaagttcgatagagaaaccggagtggaattagagaaaaaaccgaagtccttgaagaatggtgatgcaggaattgttaagatg 16231585  T
Q  318 attcctatgaagcctatg 335  Q
    ||||||||||||||||||    
T  16231584 attcctatgaagcctatg 16231567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 34690543 - 34690233
Alignment:
Q  18 attgtgggatttcgccttacgaacaagacattgtctgataagaatcttatgcgaggctatgttgcctcaaactccaaggatgaaccagccatggaggctg 117  Q
    ||||||||||| | |||||| || |||| |||||| ||||||||||||| ||||||||||||||| ||| |||||||| ||||||| |||||||||||||    
T  34690543 attgtgggattgcaccttacaaataagaaattgtccgataagaatcttaggcgaggctatgttgcgtcagactccaagtatgaaccggccatggaggctg 34690444  T
Q  118 ctaaatttacatcccgcgttataatcattaatcacccgtcggtgattacgaaaggatatactcctatcctcgactgccacacttcacacgttgctgtcaa 217  Q
    ||||||||||||| || |||||  || |||| ||||| ||   |||||| ||||||||||||||| |||| ||||||||| | || |||  |||||||||    
T  34690443 ctaaatttacatctcgtgttatcgtctttaaccacccttcaaagattaccaaaggatatactcctgtccttgactgccacgcctcccacactgctgtcaa 34690344  T
Q  218 atttgctaagctggttacaaagttcgatagagaaaccggagtggaattagagaaaaaaccgaagtccttgaagaatggtgatgcaggaattgttaagatg 317  Q
     ||||||||||| ||||| | ||||||||| ||| | || |||||||| ||||| || || | ||| ||||||||||||||||| |   |||||||||||    
T  34690343 gtttgctaagcttgttacgatgttcgatagggaatcaggtgtggaattggagaagaagcccatgtctttgaagaatggtgatgccgctgttgttaagatg 34690244  T
Q  318 attcctatgaa 328  Q
    |||||||||||    
T  34690243 attcctatgaa 34690233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 34712955 - 34712645
Alignment:
Q  18 attgtgggatttcgccttacgaacaagacattgtctgataagaatcttatgcgaggctatgttgcctcaaactccaaggatgaaccagccatggaggctg 117  Q
    ||||||||||| | |||||| || |||| |||||| ||||||||||||| ||||||||||||||| ||| |||||||| ||||||| |||||||||||||    
T  34712955 attgtgggattgcaccttacaaataagaaattgtccgataagaatcttaggcgaggctatgttgcgtcagactccaagtatgaaccggccatggaggctg 34712856  T
Q  118 ctaaatttacatcccgcgttataatcattaatcacccgtcggtgattacgaaaggatatactcctatcctcgactgccacacttcacacgttgctgtcaa 217  Q
    ||||||||||||| || |||||  || |||| ||||| ||   |||||| ||||||||||||||| |||| ||||||||| | || |||  |||||||||    
T  34712855 ctaaatttacatctcgtgttatcgtctttaaccacccttcaaagattaccaaaggatatactcctgtccttgactgccacgcctcccacactgctgtcaa 34712756  T
Q  218 atttgctaagctggttacaaagttcgatagagaaaccggagtggaattagagaaaaaaccgaagtccttgaagaatggtgatgcaggaattgttaagatg 317  Q
     ||||||||||| ||||| | ||||||||| ||| | || |||||||| ||||| || || | ||| ||||||||||||||||| |   |||||||||||    
T  34712755 gtttgctaagcttgttacgatgttcgatagggaatcaggtgtggaattggagaagaagcccatgtctttgaagaatggtgatgccgctgttgttaagatg 34712656  T
Q  318 attcctatgaa 328  Q
    |||||||||||    
T  34712655 attcctatgaa 34712645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 241
Target Start/End: Original strand, 38138487 - 38138660
Alignment:
Q  68 gcgaggctatgttgcctcaaactccaaggatgaaccagccatggaggctgctaaatttacatcccgcgttataatcattaatc-acccgtcggtgattac 166  Q
    ||||||||||||||||||| |||||||| |||| ||||||| |||||||||||||||||||||||| ||||| ||||  |||| | | | | | ||||      
T  38138487 gcgaggctatgttgcctcagactccaagcatgacccagccacggaggctgctaaatttacatcccgtgttatcatcacgaatcaaactggccg-gattca 38138585  T
Q  167 gaaaggatatactcctatcctcgactgccacacttcacacgttgctgtcaaatttgctaagctggttacaaagtt 241  Q
     || || ||||| ||||| || ||||||||||| || |||||| ||||||| ||||||||||| ||||| |||||    
T  38138586 aaatggctatacacctattctggactgccacacctcccacgttcctgtcaagtttgctaagcttgttaccaagtt 38138660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 234
Target Start/End: Original strand, 7891560 - 7891745
Alignment:
Q  49 tgtctgataagaatcttatgcgaggctatgttgcctcaaactccaaggatgaaccagccatggaggctgctaaatttacatcccgcgttataatcattaa 148  Q
    |||||| |||| |||| | ||||||||||||||||||||||||||||  ||  ||||| |||||||||||| |||||||||| |  ||||| ||| | ||    
T  7891560 tgtctgctaaggatctcaggcgaggctatgttgcctcaaactccaagcgtggcccagctatggaggctgctgaatttacatctcatgttatcatcttgaa 7891659  T
Q  149 tcacccgtcggtgattacgaaaggatatactcctatcctcgactgccacacttcacacgttgctgtcaaatttgctaagctggtta 234  Q
    ||| ||      |||||  || || ||||| ||||| |||||||||||||| || ||| |||||||||| ||||| ||||| ||||    
T  7891660 tcatcctggccagattagaaatggctatacacctattctcgactgccacacctcccacattgctgtcaagtttgccaagcttgtta 7891745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 43044646 - 43044591
Alignment:
Q  75 tatgttgcctcaaactccaaggatgaaccagccatggaggctgctaaatttacatc 130  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||    
T  43044646 tatgttgcctcaaactccaaggatgacccagccaaggaggctgctaactttacatc 43044591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 43067345 - 43067400
Alignment:
Q  75 tatgttgcctcaaactccaaggatgaaccagccatggaggctgctaaatttacatc 130  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||    
T  43067345 tatgttgcctcaaactccaaggatgacccagccaaggaggctgctaactttacatc 43067400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 3300380 - 3300325
Alignment:
Q  75 tatgttgcctcaaactccaaggatgaaccagccatggaggctgctaaatttacatc 130  Q
    |||||||||||||||||||||||||| || |||| |||||||||||| ||||||||    
T  3300380 tatgttgcctcaaactccaaggatgaccctgccaaggaggctgctaactttacatc 3300325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 43083490 - 43083435
Alignment:
Q  75 tatgttgcctcaaactccaaggatgaaccagccatggaggctgctaaatttacatc 130  Q
    |||||||||||||||||||||||||| ||||||| ||| |||||||| ||||||||    
T  43083490 tatgttgcctcaaactccaaggatgacccagccaaggaagctgctaactttacatc 43083435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 40035301 - 40035379
Alignment:
Q  49 tgtctgataagaatcttatgcgaggctatgttgcctcaaactccaaggatgaaccagccatggaggctgctaaatttac 127  Q
    |||||| |||| |||| | || ||| |||||||||||||||||||| ||||| ||||||||||| || | |||||||||    
T  40035301 tgtctgttaaggatctcaagcaaggttatgttgcctcaaactccaacgatgatccagccatggaagccgttaaatttac 40035379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 43077219 - 43077277
Alignment:
Q  72 ggctatgttgcctcaaactccaaggatgaaccagccatggaggctgctaaatttacatc 130  Q
    |||||||||||||| ||||||| |||||| ||||||| |||||| ||||| ||||||||    
T  43077219 ggctatgttgcctctaactccatggatgacccagccaaggaggccgctaactttacatc 43077277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 4231111 - 4231056
Alignment:
Q  75 tatgttgcctcaaactccaaggatgaaccagccatggaggctgctaaatttacatc 130  Q
    ||||||||||||||| |||||||||| ||||||| |||||||||||| || |||||    
T  4231111 tatgttgcctcaaacaccaaggatgacccagccaaggaggctgctaacttcacatc 4231056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 4619342 - 4619295
Alignment:
Q  68 gcgaggctatgttgcctcaaactccaaggatgaaccagccatggaggc 115  Q
    |||||||||||||| ||||||||||||| |||| ||||||| ||||||    
T  4619342 gcgaggctatgttgtctcaaactccaagcatgacccagccaaggaggc 4619295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 16348799 - 16348753
Alignment:
Q  69 cgaggctatgttgcctcaaactccaaggatgaaccagccatggaggc 115  Q
    ||||||||||||||||||||||||||| || | ||||||| ||||||    
T  16348799 cgaggctatgttgcctcaaactccaagcatcacccagccaaggaggc 16348753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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