View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10426_low_8 (Length: 263)
Name: NF10426_low_8
Description: NF10426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10426_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 47306924 - 47307144
Alignment:
| Q |
16 |
ataaattgagcaagcataatataaattagttattagcaggctccaatttaactttgaccccacttggaggaggagcaggcgcactcatattatgattatt |
115 |
Q |
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| T |
47306924 |
ataaattgagcaagcataatataaattagttatcagcaggctccaatttaactttgaccccacttagaggaggagcaggcgcactcatattatgattatt |
47307023 |
T |
|
| Q |
116 |
ataacttacagaaacagcatgtgactggtcaacagaagcaatgggaacaaaagtagttgttccatcattgagcttttggaatcggagatctagtctcttt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47307024 |
ataacttacagaaacagcatgtgactggtcaacagaagcaatgggaacaaaagtagttgttccatcattgagcttttggaatcggagatctggtctcttt |
47307123 |
T |
|
| Q |
216 |
cggatcctagacatgtatctc |
236 |
Q |
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||||||||||||||||||||| |
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| T |
47307124 |
cggatcctagacatgtatctc |
47307144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 47285366 - 47285587
Alignment:
| Q |
18 |
aaattgagcaagcataatataaattagttattagcaggctccaatttaactttgaccccacttggaggaggagcaggcgcactcatattatgattattat |
117 |
Q |
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|||||||||| |||||||||| |||| |||| | || ||| ||||||||| ||||||||| ||||||||||| || || ||||| ||| ||| || |
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| T |
47285366 |
aaattgagcatgcataatatatattaattatcaacaaactcatgtttaacttttaccccacttagaggaggagcacaggcgcttatattttgagtatcat |
47285465 |
T |
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| Q |
118 |
aacttacagaaacagcatgtgactggtcaacagaagcaatg---ggaacaaaagtagttgttccatcattgagcttttggaatc-ggagatctagtctct |
213 |
Q |
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|||| | |||| |||||| ||||| |||| | |||||||| | ||||| ||||||||||||||||| |||||||| ||||| |||||| | |||||| |
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| T |
47285466 |
aactgaaagaaggagcatgcgactgatcaataaaagcaatgacagaaacaagagtagttgttccatcatcgagctttt-gaatctggagatatggtctct |
47285564 |
T |
|
| Q |
214 |
ttcggatcctagacatgtatctc |
236 |
Q |
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||||||||||||||||||||||| |
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| T |
47285565 |
ttcggatcctagacatgtatctc |
47285587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 2589557 - 2589634
Alignment:
| Q |
159 |
ggaacaaaagtagttgttccatcattgagcttttggaatcggagatctagtctctttcggatcctagacatgtatctc |
236 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||| | |||||||||||||| |||||||||||||| |
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| T |
2589557 |
ggaacaaaagtagttgttccatcattgagcttttgaatccggagatttggtctctttcggatcttagacatgtatctc |
2589634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 236
Target Start/End: Complemental strand, 2589979 - 2589838
Alignment:
| Q |
98 |
actcatattatgattattataacttacagaaacagcatgtgactggtcaacagaagcaatgg---gaacaaaagtagttgttccatcattgagcttttgg |
194 |
Q |
| |
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||||||||| ||||||| |||| | |||||| ||||||| ||||| ||||||||| ||| |||||||||| ||||||||| ||||||| ||||| |
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| T |
2589979 |
actcatattttgattatcataattgacagaagcagcatgcgactgatcaacagaaacaacaactcgaacaaaagttgttgttccaacattgagtttttga |
2589880 |
T |
|
| Q |
195 |
aatcggagatctagtctctttcggatcctagacatgtatctc |
236 |
Q |
| |
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| | |||| | |||||||| |||||||||||||||||||| |
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| T |
2589879 |
atatgaagatttggtctctttgggatcctagacatgtatctc |
2589838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 10299617 - 10299694
Alignment:
| Q |
159 |
ggaacaaaagtagttgttccatcattgagcttttggaatc-ggagatctagtctctttcggatcctagacatgtatctc |
236 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||| |||||| | |||||||| |||| |||||||||||||| |
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| T |
10299617 |
ggaacaaaagtagttgttctatcattgagctttt-gaatctggagatttggtctcttttagatcatagacatgtatctc |
10299694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 236
Target Start/End: Complemental strand, 10300042 - 10299899
Alignment:
| Q |
96 |
gcactcatattatgattattataacttacagaaacagcatgtgactggtcaacagaagcaatgg---gaacaaaagtagttgttccatcattgagctttt |
192 |
Q |
| |
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||||||||||| ||||||| |||| | |||||| ||||||| ||||| |||| |||| ||| |||||||||| ||||||||| ||||||| |||| |
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| T |
10300042 |
gcactcatattttgattatcataattgacagaagcagcatgcgactgatcaatagaaacaacaacttgaacaaaagttgttgttccaacattgag-tttt |
10299944 |
T |
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| Q |
193 |
ggaatcgga-gatctagtctctttcggatcctagacatgtatctc |
236 |
Q |
| |
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|||||| || ||| | ||||||| |||||||||||||||||||| |
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| T |
10299943 |
ggaatctgaagattttatctctttgggatcctagacatgtatctc |
10299899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 22222145 - 22222367
Alignment:
| Q |
18 |
aaattgagcaagcataatataaattagttattagcaggctccaatttaactttgaccccacttggaggaggagcaggcgcactcatattatgattattat |
117 |
Q |
| |
|
|||||||||| |||||||||| ||| ||||||| | ||||||||||| ||| || || ||| ||||||||||| | | ||||||| ||||||| || |
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| T |
22222145 |
aaattgagcatgcataatatattttaattattagt-gtctccaatttaatttttactccgcttaccggaggagcaggggaagtcatattttgattatcat |
22222243 |
T |
|
| Q |
118 |
aacttacagaaacagcatgtgactggtcaacagaagcaatgg---gaacaaaagtagttgttccatcattgagcttttggaatcggagatctagt--ctc |
212 |
Q |
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|| | ||| || ||||||| || ||||||| |||||||| ||||||||||||||||||||||||||| ||| || | ||||||| | || ||| |
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| T |
22222244 |
aattgacaaaagcagcatgagattggtcaatagaagcaacaactcgaacaaaagtagttgttccatcattgatcttatgaatccggagatttggtcactc |
22222343 |
T |
|
| Q |
213 |
tttcggatcctagacatgtatctc |
236 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
22222344 |
tttcggatcctagacatgtatctc |
22222367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 193
Target Start/End: Complemental strand, 38261180 - 38261146
Alignment:
| Q |
159 |
ggaacaaaagtagttgttccatcattgagcttttg |
193 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
38261180 |
ggaacaaaagtagttgttccatcattgagcttttg |
38261146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 193
Target Start/End: Complemental strand, 38244880 - 38244846
Alignment:
| Q |
159 |
ggaacaaaagtagttgttccatcattgagcttttg |
193 |
Q |
| |
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||||||||||||||| ||||||||||||||||||| |
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|
| T |
38244880 |
ggaacaaaagtagttcttccatcattgagcttttg |
38244846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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