View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10426_low_9 (Length: 250)
Name: NF10426_low_9
Description: NF10426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10426_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 12821574 - 12821335
Alignment:
| Q |
3 |
ttttgaaattcaaatttttattgttatgttttcctcattttttgcttgaaaatagtaaa-gtgatgtgtatgtggttattgttatttaatacgacctttc |
101 |
Q |
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|||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || ||| |||||||||| || |||| |
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| T |
12821574 |
ttttgaaattgaaatttctattgttatgttttcctgattttttgcttgaaaatagtaaacgtgatgtgtatgttgtcatttgtatttaatacaacatttc |
12821475 |
T |
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| Q |
102 |
c-atatcctatgcagaataattcagcttcccccttctccatattttttctgtttccaacacatcctttatgccttcaattatgcactatatatacacttg |
200 |
Q |
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| |||||||||||||| |||| ||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12821474 |
ccatatcctatgcagactaatacagcttcccacttctccatattatttttgtttccaacacatcctttatgccttcaattatgcattatatatacacttg |
12821375 |
T |
|
| Q |
201 |
aatacaaaacatgtctatcatcttccaaatctcccctttg |
240 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||| |
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| T |
12821374 |
aatacataacatgtctatcatcttccaaatctccactttg |
12821335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 12827216 - 12826977
Alignment:
| Q |
3 |
ttttgaaattcaaatttttattgttatgttttcctcattttttgcttgaaaatagtaaa-gtgatgtgtatgtggttattgttatttaatacgacctttc |
101 |
Q |
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|||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || ||| |||||||||| || |||| |
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| T |
12827216 |
ttttgaaattgaaatttctattgttatgttttcctgattttttgcttgaaaatagtaaacgtgatgtgtatgttgtcatttgtatttaatacaacatttc |
12827117 |
T |
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| Q |
102 |
c-atatcctatgcagaataattcagcttcccccttctccatattttttctgtttccaacacatcctttatgccttcaattatgcactatatatacacttg |
200 |
Q |
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| T |
12827116 |
ccatatcctatgcagactaatacagcttcccacttctccatattatttttgtttccaacacatcctttatgccttcaattatgcaatatatatacacttg |
12827017 |
T |
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| Q |
201 |
aatacaaaacatgtctatcatcttccaaatctcccctttg |
240 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||| |
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| T |
12827016 |
aatacataacatgtctatcatcttccaaatctccactttg |
12826977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 12826201 - 12826118
Alignment:
| Q |
157 |
aacacatcctttatgccttcaattatgcactatatatacacttgaatacaaaacatgtctatcatcttccaaatctcccctttg |
240 |
Q |
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| T |
12826201 |
aacacatcctttatgccttcaattatgcactatatatacacttgaatacataacatgtctatcatcttccaaatctccactttg |
12826118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 38506077 - 38506314
Alignment:
| Q |
3 |
ttttgaaattcaaatttttattgttatgttttcctcattttttgcttgaaaatagtaaa-gtgatgtgtatgtggttattgttatttaatacgaccttt- |
100 |
Q |
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||||||||||||||| ||||||| ||||| ||| ||||||||||||||||||| ||| ||||| |||| ||||| ||| ||||||||| ||||||| |
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| T |
38506077 |
ttttgaaattcaaatgactattgtt-tgtttccctgattttttgcttgaaaatagaaaatgtgatatgtacgtggtcatttgtatttaatatgacctttt |
38506175 |
T |
|
| Q |
101 |
ccatatcctatgcagaataattcagcttcccccttctccatattttttctgtttccaacacatcctttatgccttcaattatgcactatatatacacttg |
200 |
Q |
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||| |||||||||||||| | | |||| ||| |||||||||||| ||||||||||||| |||||| |||| |||||||||||| |||||||||||||||| |
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| T |
38506176 |
ccaaatcctatgcagaattaataagctacccacttctccatattgtttctgtttccaatacatcccttataccttcaattatgaactatatatacacttg |
38506275 |
T |
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| Q |
201 |
aatacaaaacatgtctatcatcttccaaatctccccttt |
239 |
Q |
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|||||| | |||||||| |||| ||||||||||| |||| |
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| T |
38506276 |
aatacagaccatgtctaccatcatccaaatctcctcttt |
38506314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 16965402 - 16965467
Alignment:
| Q |
133 |
cttctccatattttttctgtttccaacacatcctttatgccttcaattatgcactatatatacact |
198 |
Q |
| |
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||||||||| || |||||||||||||||||||| |||| | |||| ||||| |||||||||||||| |
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| T |
16965402 |
cttctccatgttgtttctgtttccaacacatcccttatacattcagttatgaactatatatacact |
16965467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 34704305 - 34704366
Alignment:
| Q |
133 |
cttctccatattttttctgtttccaacacatcctttatgccttcaattatgcactatatata |
194 |
Q |
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||||||||| || ||||||||||||||||||| |||| |||||| ||||| |||||||||| |
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| T |
34704305 |
cttctccatgttgtttctgtttccaacacatctcttattccttcagttatgaactatatata |
34704366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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