View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10427_high_1 (Length: 609)

Name: NF10427_high_1
Description: NF10427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10427_high_1
NF10427_high_1
[»] chr4 (20 HSPs)
chr4 (314-590)||(55870933-55871209)
chr4 (1-248)||(55871192-55871439)
chr4 (250-310)||(20281205-20281265)
chr4 (248-313)||(24827826-24827891)
chr4 (248-313)||(31759668-31759733)
chr4 (248-312)||(19238588-19238652)
chr4 (248-311)||(14451758-14451820)
chr4 (252-314)||(21660153-21660215)
chr4 (252-314)||(21668917-21668979)
chr4 (248-313)||(37109361-37109426)
chr4 (248-311)||(19680800-19680863)
chr4 (251-314)||(24234649-24234712)
chr4 (250-313)||(36421248-36421311)
chr4 (254-313)||(49576904-49576963)
chr4 (248-313)||(5795419-5795484)
chr4 (248-313)||(46545712-46545777)
chr4 (248-313)||(47044718-47044783)
chr4 (248-313)||(55427210-55427275)
chr4 (266-314)||(26489884-26489932)
chr4 (250-298)||(52254429-52254477)
[»] chr2 (22 HSPs)
chr2 (423-562)||(34675401-34675540)
chr2 (248-313)||(37480076-37480141)
chr2 (250-313)||(14780509-14780572)
chr2 (248-313)||(19244110-19244175)
chr2 (248-311)||(42602555-42602618)
chr2 (248-314)||(19016032-19016098)
chr2 (248-298)||(29197401-29197451)
chr2 (248-313)||(23052533-23052598)
chr2 (248-313)||(34041598-34041663)
chr2 (248-313)||(35916087-35916152)
chr2 (248-313)||(39714993-39715058)
chr2 (248-313)||(42327405-42327470)
chr2 (248-312)||(5147690-5147754)
chr2 (250-298)||(7667494-7667542)
chr2 (248-311)||(1729817-1729880)
chr2 (248-311)||(32106567-32106630)
chr2 (248-298)||(7799060-7799110)
chr2 (248-314)||(12994385-12994451)
chr2 (267-313)||(42420289-42420335)
chr2 (248-313)||(29503272-29503337)
chr2 (248-313)||(30808657-30808722)
chr2 (254-294)||(4881712-4881752)
[»] chr5 (16 HSPs)
chr5 (414-560)||(24888470-24888616)
chr5 (248-314)||(30883207-30883273)
chr5 (248-313)||(16773808-16773873)
chr5 (248-313)||(40461623-40461688)
chr5 (248-298)||(8278300-8278350)
chr5 (248-313)||(14495815-14495880)
chr5 (248-313)||(25627058-25627123)
chr5 (254-313)||(1410669-1410728)
chr5 (248-311)||(34984807-34984870)
chr5 (251-313)||(16436622-16436683)
chr5 (248-298)||(22737083-22737133)
chr5 (248-298)||(40281117-40281167)
chr5 (248-313)||(16457811-16457876)
chr5 (248-313)||(19043459-19043524)
chr5 (250-298)||(15641817-15641865)
chr5 (250-298)||(18437088-18437136)
[»] chr3 (21 HSPs)
chr3 (248-314)||(39976440-39976506)
chr3 (248-298)||(31510743-31510793)
chr3 (248-313)||(24481582-24481647)
chr3 (248-313)||(27093371-27093436)
chr3 (248-313)||(37788475-37788540)
chr3 (248-312)||(47810755-47810819)
chr3 (254-313)||(4844521-4844580)
chr3 (254-313)||(4870217-4870276)
chr3 (248-311)||(5499419-5499482)
chr3 (248-311)||(7673270-7673333)
chr3 (254-313)||(17554778-17554837)
chr3 (259-306)||(26411557-26411604)
chr3 (249-311)||(8390639-8390701)
chr3 (248-298)||(36720382-36720432)
chr3 (248-293)||(9832498-9832543)
chr3 (248-313)||(14186649-14186713)
chr3 (248-313)||(21960552-21960617)
chr3 (251-308)||(27211747-27211804)
chr3 (248-309)||(51766897-51766957)
chr3 (255-295)||(12761520-12761560)
chr3 (250-313)||(17034991-17035052)
[»] chr7 (26 HSPs)
chr7 (248-313)||(22760864-22760929)
chr7 (248-298)||(23301627-23301677)
chr7 (248-298)||(2446309-2446359)
chr7 (248-314)||(23552119-23552185)
chr7 (248-313)||(7801181-7801246)
chr7 (248-313)||(15137554-15137619)
chr7 (248-313)||(18056785-18056850)
chr7 (248-313)||(20335841-20335906)
chr7 (248-313)||(26459420-26459485)
chr7 (248-313)||(42836011-42836076)
chr7 (248-313)||(43215185-43215250)
chr7 (248-313)||(43590908-43590973)
chr7 (243-311)||(30442484-30442552)
chr7 (243-314)||(3280494-3280565)
chr7 (248-311)||(5273602-5273665)
chr7 (255-298)||(36877239-36877282)
chr7 (248-313)||(41487363-41487425)
chr7 (248-298)||(26526291-26526341)
chr7 (248-298)||(27776173-27776223)
chr7 (248-313)||(14058254-14058319)
chr7 (248-313)||(14368282-14368347)
chr7 (248-313)||(22932721-22932786)
chr7 (248-313)||(25021345-25021410)
chr7 (252-313)||(41519274-41519335)
chr7 (250-314)||(18884414-18884478)
chr7 (249-313)||(29385753-29385817)
[»] chr6 (10 HSPs)
chr6 (248-313)||(31623001-31623066)
chr6 (248-313)||(33549105-33549170)
chr6 (248-313)||(12234517-12234582)
chr6 (250-299)||(13441053-13441102)
chr6 (249-313)||(32613150-32613214)
chr6 (253-313)||(34444809-34444869)
chr6 (267-313)||(3779359-3779405)
chr6 (248-314)||(12188312-12188378)
chr6 (248-298)||(12633010-12633060)
chr6 (248-298)||(21418471-21418521)
[»] scaffold0258 (1 HSPs)
scaffold0258 (248-313)||(15333-15398)
[»] chr8 (14 HSPs)
chr8 (248-313)||(19703497-19703562)
chr8 (248-313)||(23361659-23361724)
chr8 (248-313)||(44780124-44780189)
chr8 (249-313)||(2203494-2203558)
chr8 (250-294)||(25058670-25058714)
chr8 (248-298)||(20994483-20994533)
chr8 (248-314)||(22268943-22269008)
chr8 (248-298)||(29431012-29431062)
chr8 (248-313)||(6436565-6436630)
chr8 (248-313)||(8059633-8059698)
chr8 (248-313)||(16852341-16852406)
chr8 (248-313)||(26688866-26688931)
chr8 (248-313)||(28783061-28783126)
chr8 (249-313)||(3624582-3624646)
[»] chr1 (23 HSPs)
chr1 (248-311)||(31794276-31794339)
chr1 (248-313)||(10526824-10526889)
chr1 (248-313)||(27567132-27567197)
chr1 (248-313)||(51814495-51814560)
chr1 (248-313)||(52116791-52116856)
chr1 (248-311)||(25297773-25297836)
chr1 (248-315)||(45235387-45235454)
chr1 (248-314)||(8904415-8904481)
chr1 (254-300)||(35187926-35187972)
chr1 (252-314)||(37400279-37400341)
chr1 (248-314)||(40257400-40257466)
chr1 (248-298)||(44126396-44126446)
chr1 (248-297)||(4280477-4280526)
chr1 (248-313)||(9165205-9165270)
chr1 (248-313)||(11687634-11687699)
chr1 (248-309)||(16169992-16170053)
chr1 (246-298)||(18459256-18459309)
chr1 (248-313)||(19528337-19528402)
chr1 (248-313)||(37046986-37047050)
chr1 (248-313)||(44961766-44961831)
chr1 (267-311)||(21325955-21325999)
chr1 (248-312)||(30759418-30759482)
chr1 (248-300)||(35609038-35609090)
[»] scaffold0517 (1 HSPs)
scaffold0517 (252-314)||(7735-7797)
[»] scaffold0126 (1 HSPs)
scaffold0126 (267-313)||(25357-25403)
[»] scaffold0291 (1 HSPs)
scaffold0291 (248-313)||(2480-2545)


Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 314 - 590
Target Start/End: Complemental strand, 55871209 - 55870933
Alignment:
Q  314 aaagacaaaaagttttcaaagttcaaatctcattactttatgttgatcattttcttaggtaacctctacggaacaaagttttaggacagcgaaaatacat 413  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55871209 aaagacaaaaagttttcaaagttcaaatctcattacattatgttgatcattttcttaggtaacctctacggaacaaagttttaggacagcgaaaatacat 55871110  T
Q  414 gaatatttttatcgtcatgtagcatcgaatagcataccggaacagcttcattgtcttgacttgacgctggcaaatgagcacaccaacaatgcagcagcac 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  55871109 gaatatttttatcgtcatgtagcatcgaatagcataccggaacagcttcattgtcttgacttgacgctggcaaatgagcacgccaacaatgcagcagcac 55871010  T
Q  514 gccttcggctaccatctgcagaccttgttcctgctctggttgacaattcttacttccactttattcttgcttcagac 590  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  55871009 gccttcggctaccatctgcagaccttgttcctgctctggttgacaattcttacttccactttgttcttgcttcagac 55870933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 55871439 - 55871192
Alignment:
Q  1 tctcttctcactctctattatacacacatgcattaacatataatatatcaaagcatgtatgtatgtgtattaactgaaaataatatttgcaggaagaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  55871439 tctcttctcactctctattatacacacatgcattaacatataatatatcaaagcatgtatgtatgtgtattaactgaaaataacatttgcaggaagaaaa 55871340  T
Q  101 atggggccagagattttgggaagtaatctggaatcacctgtaatctcctgaactcttataactaaattaatacatccttggatccacgtggtattttgaa 200  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  55871339 attgggccagagattttgggaagtaatctggaatcacctgtaatctcctgaactcttataactaaattaatacatccttgaatccacgtggtattttgaa 55871240  T
Q  201 ttagaggaaattagaagataaatataatccaaagacaaaaagttttca 248  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  55871239 ttagaggaaattagaagataaatataatgcaaagacaaaaagttttca 55871192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 20281265 - 20281205
Alignment:
Q  250 ccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtc 310  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||| | |||||||||    
T  20281265 ccacttgggttggtccggtggtattgacttgggaattgagagcgtgctcctcctcaaggtc 20281205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 24827826 - 24827891
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    |||||||| |||||||||||||||||||||||||||| || ||||| |||| | ||| ||||||||    
T  24827826 acccactttggttggtccggtggtattgacttgggacctgggagtgcgctcctcctcgaggtctca 24827891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 31759733 - 31759668
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    |||||||||||||| ||  ||||||||| ||||||||||| |||||||||| | ||||||||||||    
T  31759733 acccacttgggttgatctagtggtattggcttgggacttgggagtgtgctcctcctcaaggtctca 31759668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 312
Target Start/End: Complemental strand, 19238652 - 19238588
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctc 312  Q
    ||||||||||||||| | |||||||||| ||||||||||| |||||||||| | ||| |||||||    
T  19238652 acccacttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcgaggtctc 19238588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 14451820 - 14451758
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtct 311  Q
    |||||||||||||||| ||||||| |||||||||||  ||||||||||||| | ||||||||||    
T  14451820 acccacttgggttggttcggtggt-ttgacttgggatatgagagtgtgctcctcctcaaggtct 14451758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 314
Target Start/End: Complemental strand, 21660215 - 21660153
Alignment:
Q  252 acttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctcaa 314  Q
    ||||||||||||| ||||||||||||||| ||  || |||||||||||| ||| |||||||||    
T  21660215 acttgggttggtctggtggtattgacttgagatctgggagtgtgctcttcctcgaggtctcaa 21660153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 314
Target Start/End: Complemental strand, 21668979 - 21668917
Alignment:
Q  252 acttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctcaa 314  Q
    ||||||||||||| ||||||||||||||| ||  || |||||||||||| ||| |||||||||    
T  21668979 acttgggttggtctggtggtattgacttgagatctgggagtgtgctcttcctcgaggtctcaa 21668917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 37109426 - 37109361
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||| |  ||||||||| |||||||| || |||||||||| | ||||||||||||    
T  37109426 acccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctca 37109361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 19680863 - 19680800
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtct 311  Q
    |||||||||| |||| |  ||||||||  ||||||||||| |||||||||||| ||||||||||    
T  19680863 acccacttggattggcctagtggtattcgcttgggacttgggagtgtgctcttcctcaaggtct 19680800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 24234649 - 24234712
Alignment:
Q  251 cacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctcaa 314  Q
    |||||||||||  | |||||||||| ||||||||||| |||||||||| | || ||||||||||    
T  24234649 cacttgggttgtccaggtggtattggcttgggacttgggagtgtgctcatcctgaaggtctcaa 24234712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 313
Target Start/End: Complemental strand, 36421311 - 36421248
Alignment:
Q  250 ccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||| ||||||||| | |||||||   ||| |||||| |||||||||||||||||||||||||    
T  36421311 ccactagggttggtctgatggtattagattgagacttgcgagtgtgctctttctcaaggtctca 36421248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 49576963 - 49576904
Alignment:
Q  254 ttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||| | |||||||||| ||| ||||||| |||||||||| | ||||||||||||    
T  49576963 ttgggttggcctggtggtattggctttggacttgggagtgtgctcctcctcaaggtctca 49576904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 5795484 - 5795419
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||||| |||||| ||||||||| || |  |||| ||||| | ||||||||||||    
T  5795484 acccacttgggttggtctggtggtgttgacttggcaccttggagtatgctcctcctcaaggtctca 5795419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 46545712 - 46545777
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||| |  ||||||||| |||| ||| ||||||||||||| | |||||| |||||    
T  46545712 acccacttgggttggcctagtggtattggcttgagacctgagagtgtgctcctcctcaagatctca 46545777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 47044718 - 47044783
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    |||||||||| |||| | ||||||||||||||||||  ||||||| ||||| | ||| ||||||||    
T  47044718 acccacttggattggcctggtggtattgacttgggatctgagagtttgctcctcctcgaggtctca 47044783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 55427275 - 55427210
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||| | |||||||||| |||||||| || |||| ||||| | ||| ||||||||    
T  55427275 acccacttgggttggcctggtggtattggcttgggacctgggagtctgctcctgctcgaggtctca 55427210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 26489932 - 26489884
Alignment:
Q  266 ggtggtattgacttgggacttgagagtgtgctctttctcaaggtctcaa 314  Q
    |||||||||||||| |||| ||||||||||||||| ||| || ||||||    
T  26489932 ggtggtattgactttggacctgagagtgtgctcttcctcgagatctcaa 26489884  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 52254477 - 52254429
Alignment:
Q  250 ccacttgggttggtccggtggtattgacttgggacttgagagtgtgctc 298  Q
    ||||||| ||||||| | ||||||||||||||||  |||||||||||||    
T  52254477 ccacttgagttggtctgatggtattgacttgggatatgagagtgtgctc 52254429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 423 - 562
Target Start/End: Complemental strand, 34675540 - 34675401
Alignment:
Q  423 tatcgtcatgtagcatcgaatagcataccggaacagcttcattgtcttgacttgacgctggcaaatgagcacaccaacaatgcagcagcacgccttcggc 522  Q
    ||||| ||||||||||| |  ||||||||| |||| |||||||||||||||||||   | ||| ||||||| |||||||| |||||||||||||||| ||    
T  34675540 tatcgccatgtagcatcaagcagcataccgaaacaacttcattgtcttgacttgagattagcacatgagcataccaacaacgcagcagcacgccttcagc 34675441  T
Q  523 taccatctgcagaccttgttcctgctctggttgacaattc 562  Q
    |||| ||||| || || |||||||| || |||||||||||    
T  34675440 taccgtctgcggaactagttcctgcccttgttgacaattc 34675401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 37480076 - 37480141
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||| | |||||||||| |||||||| ||||||||||||| | ||||||||||||    
T  37480076 acccacttgggttggcctggtggtattggcttgggacctgagagtgtgctcctcctcaaggtctca 37480141  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 14780509 - 14780572
Alignment:
Q  250 ccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||||||| ||||||||||| || |||||| ||||||| || |||||||||||    
T  14780509 ccacttgggttggtccggtagtattgacttgagatttgagaatgtgctccttttcaaggtctca 14780572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 19244110 - 19244175
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    |||||||||||||||||   ||||||||||||||||| ||||||||||||| | | ||||||||||    
T  19244110 acccacttgggttggtctactggtattgacttgggacctgagagtgtgctcctccccaaggtctca 19244175  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 42602555 - 42602618
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtct 311  Q
    ||||||||||||||| |  ||||||||| |||||||| || |||||||||| ||||||||||||    
T  42602555 acccacttgggttggcctagtggtattggcttgggacctgggagtgtgctccttctcaaggtct 42602618  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 19016032 - 19016098
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctcaa 314  Q
    ||||||||||||||||| | |||||||| |||| |||||| |||||||||| | ||| |||||||||    
T  19016032 acccacttgggttggtctgatggtattggcttgagacttgggagtgtgctcctcctcgaggtctcaa 19016098  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 29197451 - 29197401
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctc 298  Q
    |||||||||||||||   |||||||||||||||||||||| ||||||||||    
T  29197451 acccacttgggttggcttggtggtattgacttgggacttgggagtgtgctc 29197401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 23052598 - 23052533
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    |||||||| |||||| | |||||||||| ||||||||||| |||||||||  | ||||||||||||    
T  23052598 acccacttaggttggcctggtggtattggcttgggacttgggagtgtgcttctcctcaaggtctca 23052533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 34041663 - 34041598
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||| |  ||||||||||||| |||  ||||||||||||| | ||||||||||||    
T  34041663 acccacttgggttggcctagtggtattgacttaggatctgagagtgtgctcctcctcaaggtctca 34041598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 35916087 - 35916152
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||||| ||||||||||||||| || || |||||||| || | |||||| |||||    
T  35916087 acccacttgggttggtctggtggtattgacttgagatttaagagtgtgttcctcctcaagatctca 35916152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 39714993 - 39715058
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    |||||||||||||||   ||||||||||||||||||| || |||||||||| | ||| ||||||||    
T  39714993 acccacttgggttggcatggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctca 39715058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 42327470 - 42327405
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||| |  ||||||||| |||||||| || |||||||||| | ||||||||||||    
T  42327470 acccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctca 42327405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 248 - 312
Target Start/End: Complemental strand, 5147754 - 5147690
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctc 312  Q
    |||||||||||||||||  |||||||||||||| ||  || |||| ||||| |||||||||||||    
T  5147754 acccacttgggttggtctagtggtattgacttgagatctgggagtatgctccttctcaaggtctc 5147690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 7667542 - 7667494
Alignment:
Q  250 ccacttgggttggtccggtggtattgacttgggacttgagagtgtgctc 298  Q
    ||||||||||||||| |||| ||||| ||||||||||| ||||||||||    
T  7667542 ccacttgggttggtcgggtgatattggcttgggacttgggagtgtgctc 7667494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 1729817 - 1729880
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtct 311  Q
    ||||||||||||||| |  ||||||||| ||||||||||| |||||||||| | ||| ||||||    
T  1729817 acccacttgggttgggctagtggtattggcttgggacttgggagtgtgctcctcctctaggtct 1729880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 32106567 - 32106630
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtct 311  Q
    ||||||||||||||| | |||||| |||||||||||| |  ||||||||||  |||||||||||    
T  32106567 acccacttgggttggcctggtggtgttgacttgggaccttggagtgtgctccctctcaaggtct 32106630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 7799110 - 7799060
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctc 298  Q
    ||||||||||||||  | |||||||||| ||||||||||| ||||||||||    
T  7799110 acccacttgggttgtcctggtggtattggcttgggacttgggagtgtgctc 7799060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 314
Target Start/End: Complemental strand, 12994451 - 12994385
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctcaa 314  Q
    |||| |||| |||||||  |||||||||||||||||| || |||||||||| | || ||||||||||    
T  12994451 acccgcttgagttggtctagtggtattgacttgggacctgggagtgtgctcctccttaaggtctcaa 12994385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 313
Target Start/End: Original strand, 42420289 - 42420335
Alignment:
Q  267 gtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||| ||| |||| ||||||||||||||| ||||||||||||    
T  42420289 gtggtattggcttaggacctgagagtgtgctcttactcaaggtctca 42420335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 29503272 - 29503337
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||| |  |||||||||  ||||||| || |||||||||| | ||||||||||||    
T  29503272 acccacttgggttggcctagtggtattggtttgggacctgggagtgtgctcctcctcaaggtctca 29503337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 30808722 - 30808657
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||||| |||| ||||| |||| ||| ||||| | ||||| | ||||||||||||    
T  30808722 acccacttgggttggtctggtgatattggcttgagacctgagaatatgctcctcctcaaggtctca 30808657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 4881712 - 4881752
Alignment:
Q  254 ttgggttggtccggtggtattgacttgggacttgagagtgt 294  Q
    |||||||| |||||||||||||||||| |||||| ||||||    
T  4881712 ttgggttgatccggtggtattgacttgagacttgggagtgt 4881752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 414 - 560
Target Start/End: Original strand, 24888470 - 24888616
Alignment:
Q  414 gaatatttttatcgtcatgtagcatcgaatagcataccggaacagcttcattgtcttgacttgacgctggcaaatgagcacaccaacaatgcagcagcac 513  Q
    |||||||| | | |||| ||||||||||  ||||||||| |||| ||||||| || |||||||| |||||| ||||||||||| | ||||||||| |  |    
T  24888470 gaatatttattttgtcaagtagcatcgagcagcataccgaaacaacttcattatcgtgacttgaggctggcgaatgagcacacaaccaatgcagctgtgc 24888569  T
Q  514 gccttcggctaccatctgcagaccttgttcctgctctggttgacaat 560  Q
    |||||| || ||||||||||||  |||||| ||||||||||||||||    
T  24888570 gccttcagcaaccatctgcagaatttgttcttgctctggttgacaat 24888616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 248 - 314
Target Start/End: Complemental strand, 30883273 - 30883207
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctcaa 314  Q
    |||||||||||||||||  ||||||||| |||||||| || |||||||||| | |||||||||||||    
T  30883273 acccacttgggttggtctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaa 30883207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 16773808 - 16773873
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||| ||||||| ||||||||||||||||||| || |||||||||| | ||| ||||||||    
T  16773808 acccacttgagttggtctggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctca 16773873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 40461688 - 40461623
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    |||||||||||||| || ||||||||| ||||| ||||||||||||||||  | ||||||||||||    
T  40461688 acccacttgggttgatctggtggtattaacttgagacttgagagtgtgcttctcctcaaggtctca 40461623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 8278350 - 8278300
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctc 298  Q
    ||||||||||||||||| | |||||||| ||||||||||| ||||||||||    
T  8278350 acccacttgggttggtctgatggtattggcttgggacttgggagtgtgctc 8278300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 14495880 - 14495815
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||| ||||||||||| ||||||||||||||||||  || |||||||||| | ||| ||||||||    
T  14495880 acccatttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctca 14495815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 25627058 - 25627123
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||| |  ||||||||| ||||| ||||| |||||||||| | ||||||||||||    
T  25627058 acccacttgggttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaaggtctca 25627123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 1410728 - 1410669
Alignment:
Q  254 ttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||| ||||||||||||||||||  || |||||||||| | ||| ||||||||    
T  1410728 ttgggttggtctggtggtattgacttgggatatgggagtgtgctcctcctcgaggtctca 1410669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 34984807 - 34984870
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtct 311  Q
    |||||||||||||||||  ||||||||| ||||| || || |||||||||| | ||||||||||    
T  34984807 acccacttgggttggtctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtct 34984870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 313
Target Start/End: Original strand, 16436622 - 16436683
Alignment:
Q  251 cacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    |||||||||||| |  ||||||||| ||||||||||| |||||||||| | ||||||||||||    
T  16436622 cacttgggttggcctagtggtattggcttgggacttg-gagtgtgctcctcctcaaggtctca 16436683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 22737083 - 22737133
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctc 298  Q
    |||||||||||||||||  ||||||||| |||||||||||  |||||||||    
T  22737083 acccacttgggttggtctagtggtattggcttgggacttggaagtgtgctc 22737133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 40281167 - 40281117
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctc 298  Q
    ||||||||||||||||  ||||||||||| ||||||  |||||||||||||    
T  40281167 acccacttgggttggttaggtggtattgatttgggatatgagagtgtgctc 40281117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 16457811 - 16457876
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    |||||||| |||||| | |||||||||| |||||||| |  |||||||||| | ||||||||||||    
T  16457811 acccacttaggttggcctggtggtattggcttgggaccttggagtgtgctcctcctcaaggtctca 16457876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 19043459 - 19043524
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||| |  ||| ||||||||||| ||||| ||||||| || ||||||| ||||||    
T  19043459 acccacttgggttggcctagtgctattgacttggaacttgggagtgtgttccttctcaaagtctca 19043524  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 15641865 - 15641817
Alignment:
Q  250 ccacttgggttggtccggtggtattgacttgggacttgagagtgtgctc 298  Q
    |||||| |||||| ||| ||||||||||||||||| || ||||||||||    
T  15641865 ccactttggttggcccgatggtattgacttgggacctgggagtgtgctc 15641817  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 18437088 - 18437136
Alignment:
Q  250 ccacttgggttggtccggtggtattgacttgggacttgagagtgtgctc 298  Q
    |||||| |||||| |  |||||||| |||||||||||||||||||||||    
T  18437088 ccacttaggttggcctagtggtattaacttgggacttgagagtgtgctc 18437136  T

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Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 248 - 314
Target Start/End: Complemental strand, 39976506 - 39976440
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctcaa 314  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39976506 acccacttaggttggttcggtggtattgacttgggacttgagagtgtgctccttctcaaggtctcaa 39976440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 31510793 - 31510743
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctc 298  Q
    |||||||| |||||||| |||||||||||||||||||||| |||| |||||    
T  31510793 acccacttaggttggtctggtggtattgacttgggacttgggagtatgctc 31510743  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 24481582 - 24481647
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||| |||||||  |||||||||  |||||||||||||||||||| |||||| | ||||||    
T  24481582 acccacttgagttggtctagtggtattggtttgggacttgagagtgtgctttttctcgacgtctca 24481647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 27093436 - 27093371
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||| |  ||||||||| ||||| ||||| |||||||||| | ||||||||||||    
T  27093436 acccacttgggttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaaggtctca 27093371  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 37788540 - 37788475
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||| || ||||||||||||||| || |  |||||||||| | ||||||||||||    
T  37788540 acccacttgggttggcccagtggtattgacttggaacctaggagtgtgctcctcctcaaggtctca 37788475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 248 - 312
Target Start/End: Complemental strand, 47810819 - 47810755
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctc 312  Q
    ||||||||||||||||| |||||||||| ||| || |||| |||||||||| | | |||||||||    
T  47810819 acccacttgggttggtctggtggtattggctttggtcttgggagtgtgctcctccgcaaggtctc 47810755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 4844580 - 4844521
Alignment:
Q  254 ttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||| ||||||||||||||||||  || |||||||||| | ||| ||||||||    
T  4844580 ttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctca 4844521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 4870276 - 4870217
Alignment:
Q  254 ttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||| ||||||||||||||||||  || |||||||||| | ||| ||||||||    
T  4870276 ttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctca 4870217  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 5499482 - 5499419
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtct 311  Q
    ||||||||||||||| | ||||||||||||||| ||  ||||||||||||| | || |||||||    
T  5499482 acccacttgggttggcctggtggtattgacttgagatctgagagtgtgctcctccttaaggtct 5499419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 7673270 - 7673333
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtct 311  Q
    ||||| || |||||||| |||||||||||||||||| |||  ||||||||  ||||||||||||    
T  7673270 acccagttaggttggtctggtggtattgacttgggatttggaagtgtgcttattctcaaggtct 7673333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 17554778 - 17554837
Alignment:
Q  254 ttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||  |||||||||| |||||||| || |||||||||||| ||||||| ||||    
T  17554778 ttgggttggtttggtggtattggcttgggacctgggagtgtgctcttcctcaagggctca 17554837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 306
Target Start/End: Original strand, 26411557 - 26411604
Alignment:
Q  259 ttggtccggtggtattgacttgggacttgagagtgtgctctttctcaa 306  Q
    |||||| |||| |||||||||||||| ||||||||||||| |||||||    
T  26411557 ttggtctggtgatattgacttgggacctgagagtgtgctccttctcaa 26411604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 8390639 - 8390701
Alignment:
Q  249 cccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtct 311  Q
    ||||||||| ||||||  ||||||||| |||| ||||||  ||||||||||| ||||||||||    
T  8390639 cccacttggattggtctagtggtattgccttgagacttggaagtgtgctcttcctcaaggtct 8390701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 36720382 - 36720432
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctc 298  Q
    ||||||||||||||||| |||||||||| |||||||  || ||||||||||    
T  36720382 acccacttgggttggtctggtggtattggcttgggatatgggagtgtgctc 36720432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 293
Target Start/End: Original strand, 9832498 - 9832543
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtg 293  Q
    ||||||||||||||| |||||||||||| |||||||| || |||||    
T  9832498 acccacttgggttggcccggtggtattggcttgggacctgggagtg 9832543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 14186649 - 14186713
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||| |  ||||||||| |||||||| || |||||||||| | ||||||||||||    
T  14186649 acccacttgggttggcctagtggtattgtcttgggacctg-gagtgtgctcctcctcaaggtctca 14186713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 21960552 - 21960617
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||| ||||||||  | |||||||||| |||||||| ||||||||||||| | ||| ||||||||    
T  21960552 acccaattgggttgcgctggtggtattggcttgggacctgagagtgtgctcctcctcgaggtctca 21960617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 308
Target Start/End: Original strand, 27211747 - 27211804
Alignment:
Q  251 cacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaagg 308  Q
    ||||||||||||||  ||||||||||| | |||||||| ||| ||||||| |||||||    
T  27211747 cacttgggttggtctcgtggtattgacctaggacttgacagtatgctcttcctcaagg 27211804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 309
Target Start/End: Original strand, 51766897 - 51766957
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggt 309  Q
    ||||||||||||| ||||| |||||||||||| |||  || |||||||||||| ||||||||    
T  51766897 acccacttgggttagtccgatggtattgactt-ggatctgggagtgtgctcttcctcaaggt 51766957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 12761520 - 12761560
Alignment:
Q  255 tgggttggtccggtggtattgacttgggacttgagagtgtg 295  Q
    |||||||||| ||||||||||||||||||| || |||||||    
T  12761520 tgggttggtctggtggtattgacttgggacctgggagtgtg 12761560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 17034991 - 17035052
Alignment:
Q  250 ccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    |||||||||||| || ||||||||||||||||||  |||||  |||||| | ||||||||||||    
T  17034991 ccacttgggttgctctggtggtattgacttgggatctgaga--gtgctcatcctcaaggtctca 17035052  T

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Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 22760864 - 22760929
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||||| ||||||||||||||||||| || |||||||||| | ||||||||||||    
T  22760864 acccacttgggttggtctggtggtattgacttgggacctgggagtgtgctcctcctcaaggtctca 22760929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 23301677 - 23301627
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctc 298  Q
    ||||||||||||||| | |||||||||||||||||||||| ||||||||||    
T  23301677 acccacttgggttggcctggtggtattgacttgggacttgggagtgtgctc 23301627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 2446309 - 2446359
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctc 298  Q
    ||||||||||||||||| | |||||||| ||||||||||| ||||||||||    
T  2446309 acccacttgggttggtctgatggtattggcttgggacttgggagtgtgctc 2446359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 23552119 - 23552185
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctcaa 314  Q
    ||||||||||||||| |  ||| |||||||||||||| || |||||||||| | |||||||||||||    
T  23552119 acccacttgggttggcctagtgctattgacttgggacctgggagtgtgctcctcctcaaggtctcaa 23552185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 7801181 - 7801246
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    |||||||||| |||| | ||||||||||||||||||| || |||||||||| |  |||||||||||    
T  7801181 acccacttggtttggcctggtggtattgacttgggacctgggagtgtgctcctcttcaaggtctca 7801246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 15137554 - 15137619
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||| | ||||||| |||||||||| ||  |||||||||| | ||||||||||||    
T  15137554 acccacttgggttggcctggtggtactgacttgggatttaggagtgtgctcctcctcaaggtctca 15137619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 18056850 - 18056785
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||| ||| ||||||||||||||||| |||  |||||||||| | || |||||||||    
T  18056850 acccacttgggttagtctggtggtattgacttgggtcttcggagtgtgctcctcctgaaggtctca 18056785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 20335906 - 20335841
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    |||||||||||||||||  | ||||||| ||||||||||| |||||||||| | ||| ||||||||    
T  20335906 acccacttgggttggtctagaggtattggcttgggacttgggagtgtgctcctcctcgaggtctca 20335841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 26459485 - 26459420
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||| |  ||||||||| |||||||| || |||||||||| | ||||||||||||    
T  26459485 acccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctca 26459420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 42836076 - 42836011
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||| |  ||||||||| |||||||| || |||||||||||| ||||||| ||||    
T  42836076 acccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcttcctcaaggcctca 42836011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 43215185 - 43215250
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    |||||||||||||||||  ||||||||| |||||||| |  |||||||||| | ||||||||||||    
T  43215185 acccacttgggttggtctagtggtattggcttgggacctcggagtgtgctcctcctcaaggtctca 43215250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 43590908 - 43590973
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||| ||||||||| | |||||||||| ||||||||||| |||||||||| | ||||| ||||||    
T  43590908 acccagttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcaatgtctca 43590973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 30442484 - 30442552
Alignment:
Q  243 ttttcacccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtct 311  Q
    |||| ||||||||||||||| || ||||||||| |||||||| || |||| ||||| | ||||||||||    
T  30442484 ttttaacccacttgggttggcccagtggtattggcttgggacctgggagtttgctcctcctcaaggtct 30442552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 3280565 - 3280494
Alignment:
Q  243 ttttcacccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctcaa 314  Q
    |||| ||||||||||||||    |||||||||| ||||||||  |||||||||||| | |||||||||||||    
T  3280565 ttttaacccacttgggttgacatggtggtattggcttgggacccgagagtgtgctcctcctcaaggtctcaa 3280494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 5273665 - 5273602
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtct 311  Q
    ||||||||||||||| | |||||| ||| |||||||| | ||||||||||| | ||||||||||    
T  5273665 acccacttgggttggcctggtggtgttggcttgggaccttagagtgtgctcctcctcaaggtct 5273602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 298
Target Start/End: Complemental strand, 36877282 - 36877239
Alignment:
Q  255 tgggttggtccggtggtattgacttgggacttgagagtgtgctc 298  Q
    ||||||| || ||||||||||||||||||||||||||| |||||    
T  36877282 tgggttgatcaggtggtattgacttgggacttgagagtatgctc 36877239  T

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Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 41487363 - 41487425
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||| | |||||||||| ||||||||||| |||||| |||   ||||||||||||    
T  41487363 acccacttgggttggcctggtggtattggcttgggacttgggagtgttctc---ctcaaggtctca 41487425  T

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Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 26526291 - 26526341
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctc 298  Q
    ||||| |||| |||||| |||||||||||||| ||| ||||||||||||||    
T  26526291 acccatttggattggtctggtggtattgacttaggatttgagagtgtgctc 26526341  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 27776173 - 27776223
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctc 298  Q
    ||||||||||||||| | ||||||||   ||||||||||||||||||||||    
T  27776173 acccacttgggttggcctggtggtatacgcttgggacttgagagtgtgctc 27776223  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 14058254 - 14058319
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    |||| |||| ||||| | |||||||||| ||||| || ||||||||||||| | ||||||||||||    
T  14058254 acccgcttgagttggcctggtggtattgtcttggaacctgagagtgtgctcatcctcaaggtctca 14058319  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 14368282 - 14368347
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    |||| |||| ||||| | |||||||||| ||||| || ||||||||||||| | ||||||||||||    
T  14368282 acccgcttgagttggcctggtggtattgtcttggaacctgagagtgtgctcatcctcaaggtctca 14368347  T

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Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 22932786 - 22932721
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||||  |||||||||| |||||||| || ||||| ||||||  ||||| |||||    
T  22932786 acccacttgggttggtatggtggtattggcttgggacctgggagtgcgctcttattcaagatctca 22932721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 25021410 - 25021345
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||| |  ||||||||| |||||||| || |||||||||| | ||||| ||||||    
T  25021410 acccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaagtctca 25021345  T

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Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 313
Target Start/End: Complemental strand, 41519335 - 41519274
Alignment:
Q  252 acttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||| |  ||||||||||||||||| ||  |||||||||| | ||||||||||||    
T  41519335 acttgggttggcctagtggtattgacttgggatttaggagtgtgctcctcctcaaggtctca 41519274  T

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Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 18884478 - 18884414
Alignment:
Q  250 ccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctcaa 314  Q
    ||||||||||||||  |||||||||||||| |||| |  |||||||||  |||| ||||||||||    
T  18884478 ccacttgggttggtttggtggtattgactttggacctcggagtgtgcttcttcttaaggtctcaa 18884414  T

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Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 29385817 - 29385753
Alignment:
Q  249 cccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    |||||||||||||| | | |||| ||| ||||||||||  |||||||||| | ||||||||||||    
T  29385817 cccacttgggttggccggatggtgttggcttgggactttggagtgtgctcctcctcaaggtctca 29385753  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 31623066 - 31623001
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    |||||||||||||||||||||||||||| |||||||| || |||||||||| | ||| ||||||||    
T  31623066 acccacttgggttggtccggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctca 31623001  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 33549105 - 33549170
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||||| |||||||||| |||||||| || |||||||||| | ||| ||||||||    
T  33549105 acccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctca 33549170  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 12234582 - 12234517
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    |||||||| |||||| | ||||||||||||||||||| || ||||||||||  |||| ||||||||    
T  12234582 acccacttaggttggcctggtggtattgacttgggacctgggagtgtgctccctctcgaggtctca 12234517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 13441053 - 13441102
Alignment:
Q  250 ccacttgggttggtccggtggtattgacttgggacttgagagtgtgctct 299  Q
    ||||||||||||||| |||||||||| |||||||| || |||||||||||    
T  13441053 ccacttgggttggtcgggtggtattggcttgggacctgggagtgtgctct 13441102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 32613214 - 32613150
Alignment:
Q  249 cccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    |||||||||||||| | |||||||||||||||||   || |||||||||| |||||||| |||||    
T  32613214 cccacttgggttggcctggtggtattgacttggggtctgggagtgtgctccttctcaagatctca 32613150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 253 - 313
Target Start/End: Original strand, 34444809 - 34444869
Alignment:
Q  253 cttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    |||||||||| | ||||||||||||||||||| | ||||||||||| | | ||||||||||    
T  34444809 cttgggttggcctggtggtattgacttgggaccttagagtgtgctcctccccaaggtctca 34444869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 313
Target Start/End: Original strand, 3779359 - 3779405
Alignment:
Q  267 gtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||| |||| |||||| |||||||||| ||||||||||||||    
T  3779359 gtggtattggcttgagacttgggagtgtgctccttctcaaggtctca 3779405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 314
Target Start/End: Complemental strand, 12188378 - 12188312
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctcaa 314  Q
    ||||||||||||||| |  ||||||||| |||||||| || |||||||||| | |||||||| ||||    
T  12188378 acccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtttcaa 12188312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 12633010 - 12633060
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctc 298  Q
    ||||||||||||||  |||||| ||||||||||||| ||| ||||||||||    
T  12633010 acccacttgggttgtcccggtgatattgacttgggatttgggagtgtgctc 12633060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 21418471 - 21418521
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctc 298  Q
    ||||| ||||||||| | |||||||||| ||||||||||| ||||||||||    
T  21418471 acccagttgggttggcctggtggtattggcttgggacttgggagtgtgctc 21418521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 15398 - 15333
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||||| |||||||||| |||||||| || |||||||||| | ||| ||||||||    
T  15398 acccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctca 15333  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 19703562 - 19703497
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||| |  ||||||||| |||||||| ||||||||||||| | ||||||||||||    
T  19703562 acccacttgggttggcctagtggtattggcttgggacctgagagtgtgctcctcctcaaggtctca 19703497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 23361724 - 23361659
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||  | ||||||||||||||||||  || |||||||||| | ||||||||||||    
T  23361724 acccacttgggttgacctggtggtattgacttgggatatgggagtgtgctcctcctcaaggtctca 23361659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 44780189 - 44780124
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||| |  |||| |||| ||||||||||| |||||||||| | ||||||||||||    
T  44780189 acccacttgggttggcctagtggcattggcttgggacttgggagtgtgctcctcctcaaggtctca 44780124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 2203494 - 2203558
Alignment:
Q  249 cccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    |||||||||||||| |  ||||||||| |||||||| || |||||||||| | ||||||||||||    
T  2203494 cccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctca 2203558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 25058714 - 25058670
Alignment:
Q  250 ccacttgggttggtccggtggtattgacttgggacttgagagtgt 294  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||    
T  25058714 ccacttggtttggtctggtggtattgacttgggacctgagagtgt 25058670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 20994533 - 20994483
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctc 298  Q
    ||||||||||||||| |  |||||||||||||||||| || ||||||||||    
T  20994533 acccacttgggttggcctagtggtattgacttgggacctgggagtgtgctc 20994483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 314
Target Start/End: Complemental strand, 22269008 - 22268943
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctcaa 314  Q
    ||||||||||||||| | |||||| ||| |||||||| |  |||||||||| |||||||||||||||    
T  22269008 acccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctc-ttctcaaggtctcaa 22268943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 29431012 - 29431062
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctc 298  Q
    ||||||||||||||| | || ||||||| ||||||||||| ||||||||||    
T  29431012 acccacttgggttggcctggcggtattggcttgggacttgggagtgtgctc 29431062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 6436630 - 6436565
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||  | |||||||||| ||||||||||  |||||||||| | | ||||||||||    
T  6436630 acccacttgggttgccctggtggtattggcttgggacttaggagtgtgctcctccgcaaggtctca 6436565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 8059633 - 8059698
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||| | | |||||||||||||| |  |||||||||| || | ||||||||||||    
T  8059633 acccacttgggttggcctgatggtattgacttggcatgtgagagtgtgatcctcctcaaggtctca 8059698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 16852341 - 16852406
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||| |  ||||||||| |||||||| || |||||||||| | ||| ||||||||    
T  16852341 acccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcgaggtctca 16852406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 26688866 - 26688931
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||| | |||||| ||| |||||||| |  |||||||||| | ||||||||||||    
T  26688866 acccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctca 26688931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 28783061 - 28783126
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    |||||||||||||||   |||||||||| |||| ||| || |||||||||| | ||||||||||||    
T  28783061 acccacttgggttggcttggtggtattggcttgagacctgggagtgtgctcctcctcaaggtctca 28783126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 3624582 - 3624646
Alignment:
Q  249 cccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    |||||||||||||| |  ||||||||| |||||||| || |||||||||| |  |||||||||||    
T  3624582 cccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcttcaaggtctca 3624646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 31794339 - 31794276
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtct 311  Q
    ||||||||||||||| |  ||||||||| ||||||||||| |||||||||| | ||||||||||    
T  31794339 acccacttgggttggcctagtggtattggcttgggacttgggagtgtgctcctcctcaaggtct 31794276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 10526824 - 10526889
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||| |||||||||||| ||||||||| |||||||| || |||| ||||| | ||||||||||||    
T  10526824 acccatttgggttggtccagtggtattggcttgggacctgggagtttgctcctcctcaaggtctca 10526889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 27567197 - 27567132
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||||| | || ||||||||||| || ||||||||||||| |  |||||||||||    
T  27567197 acccacttgggttggtcggatgatattgacttggaacctgagagtgtgctcctcttcaaggtctca 27567132  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 51814495 - 51814560
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||| | | ||||||||||||| ||  ||||||||||||| | ||||||||||||    
T  51814495 acccacttgggttggcctgatggtattgacttgagatctgagagtgtgctcctcctcaaggtctca 51814560  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 52116856 - 52116791
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||| ||||||||| | |||||||||| ||||||||||| |||||||||| | ||||| ||||||    
T  52116856 acccagttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcaatgtctca 52116791  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 25297773 - 25297836
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtct 311  Q
    |||||||||||||||||  ||||||||||||| |||  ||||||||||||| | ||| ||||||    
T  25297773 acccacttgggttggtctagtggtattgacttaggatctgagagtgtgctcctcctcgaggtct 25297836  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 315
Target Start/End: Complemental strand, 45235454 - 45235387
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctcaaa 315  Q
    ||||||||||||||||| | ||||||||  |||||||||| |||||||||| | ||| || |||||||    
T  45235454 acccacttgggttggtctgatggtattggtttgggacttgggagtgtgctcctcctcgagatctcaaa 45235387  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 8904415 - 8904481
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctcaa 314  Q
    ||||||||||||||| |  || ||||||||||||||  || |||||||||| | |||||||||||||    
T  8904415 acccacttgggttggcctagtagtattgacttgggatatgtgagtgtgctcctcctcaaggtctcaa 8904481  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 35187926 - 35187972
Alignment:
Q  254 ttgggttggtccggtggtattgacttgggacttgagagtgtgctctt 300  Q
    ||||||||| |  ||||||||||||||| ||||||||||||||||||    
T  35187926 ttgggttggcctagtggtattgacttggaacttgagagtgtgctctt 35187972  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 314
Target Start/End: Original strand, 37400279 - 37400341
Alignment:
Q  252 acttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctcaa 314  Q
    ||||||||||||| |||||||||| |||| ||| ||| ||||||||| | || ||||||||||    
T  37400279 acttgggttggtctggtggtattggcttgagacctgaaagtgtgctcctccttaaggtctcaa 37400341  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 40257400 - 40257466
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctcaa 314  Q
    ||||||||||||||| | |||||||||| |||| ||| || |||||||||| | ||| |||||||||    
T  40257400 acccacttgggttggcctggtggtattggcttgagacctgggagtgtgctcctcctcgaggtctcaa 40257466  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 44126396 - 44126446
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctc 298  Q
    ||||||||||||||| | |||||||||||| |||||| || ||||||||||    
T  44126396 acccacttgggttggcctggtggtattgacctgggacctgggagtgtgctc 44126446  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 4280526 - 4280477
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgct 297  Q
    ||||||||||||| ||  | || |||||||||||||||||||||||||||    
T  4280526 acccacttgggttagtatgatgatattgacttgggacttgagagtgtgct 4280477  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 9165270 - 9165205
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||| |  ||||||||| |||||||| || |||||||||| | ||||| ||||||    
T  9165270 acccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaagtctca 9165205  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 11687699 - 11687634
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    |||||||||||||||||| |||| ||||||||||||  ||  ||||||||| || || ||||||||    
T  11687699 acccacttgggttggtccagtggcattgacttgggatctggaagtgtgctccttttcgaggtctca 11687634  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 309
Target Start/End: Complemental strand, 16170053 - 16169992
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggt 309  Q
    ||||||||||||| | | ||||||||||||||||||| || ||||||| || | ||||||||    
T  16170053 acccacttgggttagcctggtggtattgacttgggacctgggagtgtgttcctcctcaaggt 16169992  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 18459309 - 18459256
Alignment:
Q  246 tcacccacttgggttggtccggtggta-ttgacttgggacttgagagtgtgctc 298  Q
    |||||||||||||||||||  |||||| ||| ||||||||||| ||||||||||    
T  18459309 tcacccacttgggttggtctagtggtaattggcttgggacttgggagtgtgctc 18459256  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 19528402 - 19528337
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||| | |||||||||| |||||||  |  |||||||||| | ||||||||||||    
T  19528402 acccacttgggttggcctggtggtattggcttgggatctatgagtgtgctcctcctcaaggtctca 19528337  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 37046986 - 37047050
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||||| |||||| ||| |||||||| |  ||||||||||  |||||||||||||    
T  37046986 acccacttgggttggtctggtggtgttggcttgggaccttggagtgtgctc-ctctcaaggtctca 37047050  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 44961766 - 44961831
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||||||||||| |||||||||  |||| || || ||||||||||| | |||| |||||||    
T  44961766 acccacttgggttggtcaggtggtattagcttgagatttaagagtgtgctcctcctcagggtctca 44961831  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 21325955 - 21325999
Alignment:
Q  267 gtggtattgacttgggacttgagagtgtgctctttctcaaggtct 311  Q
    |||||||||||||| ||| ||||||||| |||||| |||||||||    
T  21325955 gtggtattgacttgagacctgagagtgtactctttttcaaggtct 21325999  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 30759418 - 30759482
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctc 312  Q
    |||||||| |||| ||| |||||||||||||| |||| ||||| ||||||| | |||||| ||||    
T  30759418 acccacttaggttagtctggtggtattgacttaggacatgagattgtgctcctcctcaagatctc 30759482  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 35609038 - 35609090
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctt 300  Q
    |||||||||||||| ||||||  ||||||||||| | ||||||||||| ||||    
T  35609038 acccacttgggttgatccggtaatattgacttggaatttgagagtgtgttctt 35609090  T

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Target: scaffold0517 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 314
Target Start/End: Complemental strand, 7797 - 7735
Alignment:
Q  252 acttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctcaa 314  Q
    ||||||||||||| |||||||||| |||| ||| ||| ||||||||| | || ||||||||||    
T  7797 acttgggttggtctggtggtattggcttgagacctgaaagtgtgctcctccttaaggtctcaa 7735  T

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Target: scaffold0126 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 313
Target Start/End: Complemental strand, 25403 - 25357
Alignment:
Q  267 gtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||||||| |||| |||||| |||||||||| ||||||||||||||    
T  25403 gtggtattggcttgagacttgggagtgtgctccttctcaaggtctca 25357  T

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Target: scaffold0291 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 2545 - 2480
Alignment:
Q  248 acccacttgggttggtccggtggtattgacttgggacttgagagtgtgctctttctcaaggtctca 313  Q
    ||||| ||||||||||||||||||||||  || |||  || |||||||||| | ||||||||||||    
T  2545 acccatttgggttggtccggtggtattggttttggatctgggagtgtgctcctcctcaaggtctca 2480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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