View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10427_high_2 (Length: 590)
Name: NF10427_high_2
Description: NF10427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10427_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 2627901 - 2627590
Alignment:
| Q |
1 |
tgttacacagaaaacctcatcgtagctcccattttctaggacgaccttttattctttctggatgttgaataacaatccttcaattttgttctc---taat |
97 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
2627901 |
tgttacacagaaaacctcatggtagctccaattttctacgacgaccttttattctttctggatgttgaataacattccttcaattttgttctctaataat |
2627802 |
T |
|
| Q |
98 |
ttatgtgatatgccttcaaaattgctgaagttgtgtagccattagtctcaagagaaactgaattactcttgctggcatataacaagaaat-tcatatttg |
196 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| |
|
|
| T |
2627801 |
tcatgtgatatgccttcaaaattgctgaagttgtgtaggcattagtctcaagagaaactgaattact-ttgctagcatataacaagaaatatcatatttg |
2627703 |
T |
|
| Q |
197 |
agcagcagaccaaaaattttggttggagaagctcatggcatacattattgctgaaataattggacttcnnnnnnngtcttcgaaacgttagtgatacatt |
296 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2627702 |
agcagcagaccaaaaattttgtttggagaagctcatggcatacattattgctgaaataattggacttcaaaaaaagtcttcgaaacgttagtgatacatt |
2627603 |
T |
|
| Q |
297 |
taatcacaacaaa |
309 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2627602 |
taatcacaacaaa |
2627590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 342 - 571
Target Start/End: Complemental strand, 2627584 - 2627349
Alignment:
| Q |
342 |
atgtttaggaacttattttctcatttaatctagtagtcacaacatttcattaaaaattaaccaaattttaaccttcaaaatttgaagttagtagaaccaa |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2627584 |
atgtttaggaacttattttctcatttaatctagtagtcacaacatttcattaaaaattaaccaaattttaaccttcaaaatttgaagttagtagaaccaa |
2627485 |
T |
|
| Q |
442 |
atatgacttaactat--nnnnnnnttacctgtttaatacatcctaagaaatgagtaagttgggaaattgctatttcctatgcagaattctttgataggcc |
539 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2627484 |
atatgacttaactataaaaaaaaagtacttgtttaatacatcctaagaaatgagtaagttgggaaattgctatttgctatgcagaattctttgataggca |
2627385 |
T |
|
| Q |
540 |
ttgaccccct----attagttgatgcttgaaggcct |
571 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| |
|
|
| T |
2627384 |
ttgaccccctattaattagttgatgcttaaaggcct |
2627349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 441
Target Start/End: Original strand, 2557924 - 2557976
Alignment:
| Q |
389 |
cattaaaaattaaccaaattttaaccttcaaaatttgaagttagtagaaccaa |
441 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| || |||||||||||||||| |
|
|
| T |
2557924 |
cattaaaaactaaccaaattttaacattcaaaacttaaagttagtagaaccaa |
2557976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 55 - 160
Target Start/End: Original strand, 2553486 - 2553591
Alignment:
| Q |
55 |
tttctggatgttgaataacaatccttcaattttgttctctaatttatgtgatatgccttcaaaattgctgaagttgtgtagccattagtctcaagagaaa |
154 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| ||||| | |||||||||| || |||| | | | ||||||| |||||||||||||| | |||||| |
|
|
| T |
2553486 |
tttctggatgttgaataacactccttctatttcgttctaaagtttatgtgatttggcttctaggatacagaagttgcgtagccattagtcttatgagaaa |
2553585 |
T |
|
| Q |
155 |
ctgaat |
160 |
Q |
| |
|
||||| |
|
|
| T |
2553586 |
ttgaat |
2553591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 311 - 446
Target Start/End: Complemental strand, 39538017 - 39537878
Alignment:
| Q |
311 |
attatagctatcccaatgaaaatccggtgccatgtttaggaacttattttctcatttaatc----tagtagtcacaacatttcattaaaaattaaccaaa |
406 |
Q |
| |
|
||||||||||||||||||| | || ||||| ||| ||| ||||| ||||| | |||| || |||||||||||| ||| ||||||| |||||||| |
|
|
| T |
39538017 |
attatagctatcccaatgagattctggtgctatgcttatgaactctttttcacttttattcaatgtagtagtcacaaagtttgattaaaatgtaaccaaa |
39537918 |
T |
|
| Q |
407 |
ttttaaccttcaaaatttgaagttagtagaaccaaatatg |
446 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
39537917 |
ttttaaccttcaaaacttgaagttagtggaaccaaatatg |
39537878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University