View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10427_high_3 (Length: 580)

Name: NF10427_high_3
Description: NF10427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10427_high_3
NF10427_high_3
[»] chr4 (1 HSPs)
chr4 (17-566)||(40747319-40747871)
[»] chr7 (1 HSPs)
chr7 (154-358)||(27471593-27471797)
[»] chr5 (3 HSPs)
chr5 (217-325)||(12543323-12543427)
chr5 (272-352)||(27906260-27906340)
chr5 (301-362)||(32834781-32834842)
[»] chr3 (2 HSPs)
chr3 (217-295)||(7707665-7707743)
chr3 (190-276)||(27913878-27913966)
[»] chr8 (2 HSPs)
chr8 (333-437)||(29402537-29402641)
chr8 (170-522)||(30996433-30996784)
[»] chr2 (1 HSPs)
chr2 (158-241)||(34199062-34199145)
[»] chr6 (1 HSPs)
chr6 (254-358)||(14302530-14302634)


Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 17 - 566
Target Start/End: Complemental strand, 40747871 - 40747319
Alignment:
Q  17 agagacaaatcttgatctaatatttaggacactctcttttgagatggtgaatgaatatcaatcattacaaacttgtaagtaagttggttgaattgttctt 116  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||    
T  40747871 agagacaaatcttgatctaatatttacgacactctcttttgagatggtgaatgaatatcaatcattacaagtttgtaagtaagttggttgaattgctctt 40747772  T
Q  117 ttggtagacctttcatgaacacatattccacatgattaatgtaggttttagttatcaatccgatatctatctattctttgatgaaatgtcagtcaatctt 216  Q
    || ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40747771 ttagtagacccttcatgaacacatattccacatgattaatgtagcttttagttatcaatccgatatctatctattctttgatgaaatgtcggtcaatctt 40747672  T
Q  217 aatgagttttgtcatgtcatgttgaaaaagattgtatgcaatactaatagccgaattattgtcacaaaagaatttcatagagccttcacattatatcatc 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||    
T  40747671 aatgagttttgtcatgtcatgttgaaaaagattgtatgcaatactaatagccgatttattgttacaaaacaatttcatagagccttcacattatatcatc 40747572  T
Q  317 aaatcttctgtcacttttttcatccataatagttcacaaa---ttccttgtcccttagctctaaattctgctttagccctagatcgacctattacactta 413  Q
    |||| |||||||| ||||||||||||||||||||||||||   ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||     
T  40747571 aaattttctgtcatttttttcatccataatagttcacaaatatttccttgtcccatagctctaaattctactttagccctagatcgacctattacacttt 40747472  T
Q  414 gcttcctactccactaagcaacaattttttcacacaagaaggtacaatatcctgaagtaaatcctttatctctcgttgaacctgcataatcaatatcaat 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||    
T  40747471 gcttcctactccactaagcaacaattttttcacacaagaaggtacaatatcctaaagtaaatcctttatatctcgttgaacctgcataatcaacatcaat 40747372  T
Q  514 gtaagcctccctaattaagttttcacctcttttaaacaatactattatctctg 566  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  40747371 gtaagcctccctaattaagtttccacctcttttaaacaatactattctctctg 40747319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 358
Target Start/End: Complemental strand, 27471797 - 27471593
Alignment:
Q  154 aatgtaggttttagttatcaatccgatatctatctattctttgatgaaatgtcagtcaatcttaatgagttttgtcatgtcatgttgaaaaagattgtat 253  Q
    |||||||||| |||||||| ||||  |||| | ||  |||||||||||||| | |||||||| |||| |||||||| | ||||  |||| |||||| | |    
T  27471797 aatgtaggttgtagttatctatccattatccaacttatctttgatgaaatgccggtcaatctcaatgtgttttgtcctttcattctgaacaagattatgt 27471698  T
Q  254 gcaatactaatagccgaattattgtcacaaaagaatttcatagagccttcacattatatcatcaaatcttctgtcacttttttcatccataatagttcac 353  Q
    |||||| |||| |  || || | ||||||||| || ||||||| ||| ||||||| |||| ||||||||| ||  |||| ||||||  | |||||||||     
T  27471697 gcaatattaatggatgatttgtagtcacaaaacaacttcatagggccatcacattctatcttcaaatcttatgagacttgtttcattaacaatagttcat 27471598  T
Q  354 aaatt 358  Q
    |||||    
T  27471597 aaatt 27471593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 217 - 325
Target Start/End: Original strand, 12543323 - 12543427
Alignment:
Q  217 aatgagttttgtcatgtcatgttgaaaaagattgtatgcaatactaatagccgaattattgtcacaaaagaatttcatagagccttcacattatatcatc 316  Q
    |||| |||||||||||||||| ||||   |||| | |||||||||||| ||||||||||||||||  || |||||||||  ||||||||||| || | ||    
T  12543323 aatgtgttttgtcatgtcatgctgaag--gattatgtgcaatactaatggccgaattattgtcac--aataatttcataaggccttcacattgtaacttc 12543418  T
Q  317 aaatcttct 325  Q
    |||||||||    
T  12543419 aaatcttct 12543427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 352
Target Start/End: Original strand, 27906260 - 27906340
Alignment:
Q  272 ttattgtcacaaaagaatttcatagagccttcacattatatcatcaaatcttctgtcacttttttcatccataatagttca 352  Q
    ||||||||| |||| || ||||||||||||||||||  |||| |||||||||||   |||  ||||||||| |||||||||    
T  27906260 ttattgtcaaaaaacaacttcatagagccttcacatcgtatcttcaaatcttctagtactagtttcatccacaatagttca 27906340  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 32834781 - 32834842
Alignment:
Q  301 ttcacattatatcatcaaatcttctgtcacttttttcatccataatagttcacaaattcctt 362  Q
    ||||||||||||| | |||| ||||  ||||| ||||||||| ||||||||||| |||||||    
T  32834781 ttcacattatatcttaaaatattctagcacttatttcatccaaaatagttcacacattcctt 32834842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 295
Target Start/End: Complemental strand, 7707743 - 7707665
Alignment:
Q  217 aatgagttttgtcatgtcatgttgaaaaagattgtatgcaatactaatagccgaattattgtcacaaaagaatttcata 295  Q
    |||| |||||||| ||||||| |||| |||||| || ||||||||||| ||||| |||||| ||||||| || ||||||    
T  7707743 aatgtgttttgtcttgtcatgctgaacaagattttaagcaatactaatggccgatttattgccacaaaacaacttcata 7707665  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 190 - 276
Target Start/End: Original strand, 27913878 - 27913966
Alignment:
Q  190 ttctttgatgaaatgtcagtcaatcttaatgagtt--ttgtcatgtcatgttgaaaaagattgtatgcaatactaatagccgaattatt 276  Q
    ||||||||||||||||  || ||||| |||| |||  ||||||||||| |||||| |||||| | |||||||||||||| ||| |||||    
T  27913878 ttctttgatgaaatgttggtaaatctcaatgtgttaattgtcatgtcacgttgaacaagattatctgcaatactaatagtcgatttatt 27913966  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 437
Target Start/End: Complemental strand, 29402641 - 29402537
Alignment:
Q  333 ttttcatccataatagttcacaaattccttgtcccttagctctaaattctgctttagccctagatcgacctattacacttagcttcctactccactaagc 432  Q
    ||||| |||||||||| ||||||||||||||| || |  ||||||||||||| | |   || |||||| ||| ||||||| ||||| |||||| | ||||    
T  29402641 ttttcgtccataatagctcacaaattccttgtgccatttctctaaattctgcctcaatgcttgatcgaactactacactttgcttcttactcctccaagc 29402542  T
Q  433 aacaa 437  Q
    |||||    
T  29402541 aacaa 29402537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 522
Target Start/End: Complemental strand, 30996784 - 30996433
Alignment:
Q  170 atcaatccgatatctatctattctttgatgaaatgtcagtcaatcttaatgagttttgtcatgtcatgttgaaaaagattgtatgcaatactaatagccg 269  Q
    ||||||||  |||||| ||  |||||||||||||||  |||||||| |||  || | |||||||||| || || | |||| | ||||||| |||| |       
T  30996784 atcaatccattatctaacttctctttgatgaaatgttggtcaatctcaatttgtctagtcatgtcatattaaacatgattatgtgcaatattaatggta- 30996686  T
Q  270 aattattgtcacaaaagaatttcatagagccttcacattatatcatcaaatcttctgtcacttttttcatccataatagttcacaaattccttgtccctt 369  Q
    | |||| |||||| || || | ||||| |||||||  || |||| |||||||||||  || || ||||||| |||||||||||||||||||| ||  | |    
T  30996685 atttatcgtcacacaacaactccatagggccttcatgttgtatcttcaaatcttctagcatttgtttcatctataatagttcacaaattcctagtgtcat 30996586  T
Q  370 agctctaaattctgctttagccctagatcgacctattacacttagcttcctactccactaagcaacaattttttcacacaagaaggtacaatatcctgaa 469  Q
    || ||| |||| ||||| |   || ||| |  | | |||  || ||||| |||||| | |||||||||  ||   |||||||||  |||||||| || ||    
T  30996585 agatctgaattttgcttcaattcttgattgggcaactactgtttgcttcttactcctcaaagcaacaaggttgctacacaagaaaatacaatattctcaa 30996486  T
Q  470 gtaaatcctttatctctcgttgaacctgcataatcaatatcaatgtaagcctc 522  Q
    ||| ||| |||||| ||| ||||||||| |||||||| || | ||||||||||    
T  30996485 gtagatcttttatcactcattgaacctgtataatcaacattagtgtaagcctc 30996433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 34199145 - 34199062
Alignment:
Q  158 taggttttagttatcaatccgatatctatctattctttgatgaaatgtcagtcaatcttaatgagttttgtcatgtcatgttga 241  Q
    |||||| ||| |||||||||  |||| | || ||||||||||||||||| |||||| | |||| |||||||| | |||||||||    
T  34199145 taggttgtagctatcaatccattatcaaacttttctttgatgaaatgtcggtcaatttcaatgtgttttgtcttatcatgttga 34199062  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 358
Target Start/End: Complemental strand, 14302634 - 14302530
Alignment:
Q  254 gcaatactaatagccgaattattgtcacaaaagaatttcatagagccttcacattatatcatcaaatcttctgtcacttttttcatccataatagttcac 353  Q
    ||||||||||| | ||| |||||||||||||| || ||||| | ||||| ||||| |||| | |||| |||| | || | ||||||| | | ||||||||    
T  14302634 gcaatactaatggtcgatttattgtcacaaaacaacttcattgcgcctttacattgtatctttaaattttctatgacatgtttcatcgacattagttcac 14302535  T
Q  354 aaatt 358  Q
    |||||    
T  14302534 aaatt 14302530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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