View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10427_high_4 (Length: 496)
Name: NF10427_high_4
Description: NF10427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10427_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 33462889 - 33463366
Alignment:
| Q |
1 |
attgttgaatcaatagaagatgacaaagaaggcgaaaaatacattgaatttgagataaacaatggagaagatcatgatcatgatgaacagatattaaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33462889 |
attgttgaatcaatagaagatgacaaagaaggcgaaaaatacattgaatttgagataaacaatggagaagatcatgatcatgatgaacagatattaaatg |
33462988 |
T |
|
| Q |
101 |
agcatcagatattttctgatattgaaagttttatcctcagagaggtggccgaggatcgatcgagttcagtttcaaacttgaactctgatgaaaaagatgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33462989 |
agcatcagatattttctgatattgaaagttttatcctcagagaggtggccgaggatcgatcgagttcagtttcaaacttgaactctgatgaaaaggatgc |
33463088 |
T |
|
| Q |
201 |
agaaaaagatgagaaggaatattatccaagtgctgttgatgattttattcatctattttctgatgctcctattatgcaggtttcacattgtgaagataga |
300 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33463089 |
agaaaaagatgagaaggaagattatccaagtgctgttgatgattttattcatctattttctgatgctcctattatgcaggtttcacattgtgaagataga |
33463188 |
T |
|
| Q |
301 |
tcacttgaaatcatcaatatgcactttgagaactacaaagccattgatgatgaccggttagtacctgttaggttaatagattctatcacttgtttaaatt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33463189 |
tcacttgaaatcatcaatatgcactttgagaactacaaagccattgacgatgaccggttagtacctgttaagttaatagattctatcacttgtttaaatt |
33463288 |
T |
|
| Q |
401 |
ttgaatcatgcaaattgaatgaggatctagaggaggagaaggagaagattcaaacttttgtcagtgagtcaccggttg |
478 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33463289 |
ttgaatcatgcaaatggaatgaggatctagaggaggagaaggagaagattcaaacttttgtcagtgagtcaccggttg |
33463366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University