View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10427_low_11 (Length: 381)
Name: NF10427_low_11
Description: NF10427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10427_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 7 - 369
Target Start/End: Complemental strand, 52941385 - 52941023
Alignment:
| Q |
7 |
atagtgacattgccaacccaatcaataccaggaattggaagaaatctgaataagaaattaggacaattcatttcatatgtctctccatgattatggagat |
106 |
Q |
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| T |
52941385 |
atagtgacattgccaacccaatcaataccaggaattggaagaaatctgaataagaaattaggacaattcatttcatatgtctctccatgattatggagat |
52941286 |
T |
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| Q |
107 |
gcagatgtcgtttaccatgcatgtcaacctctactccagtacctacacatatatatatttcagttttactaagtttttaactacatactcatttttaatt |
206 |
Q |
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| T |
52941285 |
gcagatgtcgtttaccatgcatgtcaacctctactccagtacctacacatatatatatttcagttttactaagtttttaactacatactcatttttaatt |
52941186 |
T |
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| Q |
207 |
atgtaaaagaacattaaaaataaatcaatgtttacttttgaaaaaattaaggcaatttgttttattttctcacacaataaaacctatgaatatggtgaag |
306 |
Q |
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| T |
52941185 |
atgtaaaagaacattaaaaataaatcaatgtttacttttgaaaaaattaaggcaatttgttttattttctcacacaacaaaacctatgaatatggtgaag |
52941086 |
T |
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| Q |
307 |
ttttatttaccaacaaactttggaagtggagagtggcacaatgtaatttctatgtttcccttc |
369 |
Q |
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| T |
52941085 |
ttttatttaccaacaaactttggaagtggagagtggcacaatgtaatatctatgtttcccttc |
52941023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 16366695 - 16366775
Alignment:
| Q |
17 |
tgccaacccaatcaataccaggaattggaagaaatctgaataagaaattaggacaattcatttcatatgtctctccatgat |
97 |
Q |
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| T |
16366695 |
tgccaacccaatcagcaccaggaactggaagaattctaaagaaaaggttaggagaattcatctcatatgtttccccatgat |
16366775 |
T |
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