View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10427_low_12 (Length: 377)
Name: NF10427_low_12
Description: NF10427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10427_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 29 - 366
Target Start/End: Complemental strand, 42903804 - 42903466
Alignment:
| Q |
29 |
aaagacgagaaaaatattgaggaaaaaagtgtaaagtcataataaaatgtaaagcaagtggg-accaaatgtattggataaatttgaaccattagtttct |
127 |
Q |
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| T |
42903804 |
aaagacgagaaaaatattgaggaaaaaagtgtaaagtcataataaaatgtaaagcaagtggggaccaaatgtattggataaatttgaaccattagtttct |
42903705 |
T |
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| Q |
128 |
cttacaaaagtaggaatggataaatatagtttgtttgttgagtgacatagaaatggaatcacttgtatcaaagacaagaagaatggtaagaggcagagag |
227 |
Q |
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| T |
42903704 |
cttacaaaagtaggaatggataaatatagtttgtttgttgagtgacataaaaatggaatcacttgtatcaaagacaagaagaatggtaagaggcagagag |
42903605 |
T |
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| Q |
228 |
gaagtgtatgtggcagcaatgcctctaagggcttcaaagggaccaccacaattgcttatgtctgctgcttactcccttaatatttgggatttgcagcatt |
327 |
Q |
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| T |
42903604 |
gaagtgtatgtggcagcaatgcctctaagggcttcaaagggaccaccacaattgcttatgtctgctgcttactcccttaatatttgggatttgcagcatt |
42903505 |
T |
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| Q |
328 |
tcatggtcatcatcaaaccttcctcaccttcacaggttc |
366 |
Q |
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| T |
42903504 |
tcatggtcatcatcaaaccttcctcaccttcacaggttc |
42903466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 42908798 - 42908538
Alignment:
| Q |
18 |
agaagcaagttaaagacgagaaaaatattgaggaaaaaagtgtaaagtcataataaaatgtaaagcaagtggg-accaaatgtattggataaatttgaac |
116 |
Q |
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| T |
42908798 |
agaagcaagttaaagacgagaaaaatattgaggaaaaaagtgtaaagtcataataaaatgtaaagcaagtggggaccaaatgtattggataaatttgaac |
42908699 |
T |
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| Q |
117 |
cattagtttctcttacaaaagtaggaatggataaatatagtttgtttgttgagtgacatagaaatggaatcacttgtatcaaagacaagaagaatggt-- |
214 |
Q |
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| T |
42908698 |
cattagtttctcttacaaaagtaggaatggataaatatagtttgtttgttgagtgacatagaaatggaatcacttgtatcaaagacaagaagaatggtaa |
42908599 |
T |
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| Q |
215 |
---aagaggcagagaggaagtgtatgtggcagcaatgcctctaagggcttcaaagggacca |
272 |
Q |
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| T |
42908598 |
gataagaggcagagaggaagtgtatgtggcagcaatgcctctaagggcttcaaagggacca |
42908538 |
T |
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