View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10427_low_13 (Length: 325)
Name: NF10427_low_13
Description: NF10427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10427_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 8527478 - 8527173
Alignment:
| Q |
1 |
aatcaactttattattctccttcatcttatctcattatgtttaattctaccaaccttagctaaaaattcagattcaaaaaatgattataacaacgaccta |
100 |
Q |
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| T |
8527478 |
aatcaactttattattctccttcatcttatctcattatgtttaattctaccaaccttagctaaaaattcagattcaaaaaatgattataacaacgaccta |
8527379 |
T |
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| Q |
101 |
ttagacaatattccaactccaagttacagcaacaacatccccaatagtaacactccacaaaatgttgctgtcatgaacacaattgactcatgctggagat |
200 |
Q |
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| T |
8527378 |
ttagacaatattccaactccaagttacagcaacaacatccccaatagtaacactccacaaaatgttgctgtcatgaacacaattgactcatgctggagat |
8527279 |
T |
|
| Q |
201 |
caaattcaaattgggtttcaaatcgtcaatcactagcagattgtgcaattggatttggcaaagatgcaattggaggaaaatatggtgagatatatgaagt |
300 |
Q |
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| T |
8527278 |
caaattcaaattgggtttcaaatcgtcaatcactagcagattgtgcaattggatttggcaaagatgcaattggaggaaaatatggtgagatatatgaagt |
8527179 |
T |
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| Q |
301 |
cactga |
306 |
Q |
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|||||| |
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| T |
8527178 |
cactga |
8527173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 173 - 304
Target Start/End: Complemental strand, 8519214 - 8519084
Alignment:
| Q |
173 |
atgaacacaattgactcatgctggagatcaaattcaaattgggtttcaaatcgtcaatcactagcagattgtgcaattggatttggcaaagatgcaattg |
272 |
Q |
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| T |
8519214 |
atgaacacaattgactcatgctggagaaccaattcaaagtgggcttcaaatcgccaatccttagcagattgtgcaaaaggatttggcagtaatgcaactg |
8519115 |
T |
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| Q |
273 |
gaggaaaatatggtgagatatatgaagtcact |
304 |
Q |
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| T |
8519114 |
gaggaaagtttggtga-aaatatgaagtcact |
8519084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 294
Target Start/End: Original strand, 8519541 - 8519662
Alignment:
| Q |
173 |
atgaacacaattgactcatgctggagatcaaattcaaattgggtttcaaatcgtcaatcactagcagattgtgcaattggatttggcaaagatgcaattg |
272 |
Q |
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||||||||||||||||||||||||||| | |||||||| |||| ||||||||| ||||| ||||||||||||||| |||||||||| |||||| || |
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| T |
8519541 |
atgaacacaattgactcatgctggagaaccaattcaaagtgggcttcaaatcgccaatccttagcagattgtgcaaaaggatttggcagtaatgcaactg |
8519640 |
T |
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| Q |
273 |
gaggaaaatatggtgagatata |
294 |
Q |
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||||||| | |||||| ||||| |
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| T |
8519641 |
gaggaaagtttggtgaaatata |
8519662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 8519743 - 8519692
Alignment:
| Q |
8 |
tttattattctccttcatcttatctcattatgtttaattctaccaaccttag |
59 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
8519743 |
tttattattctccttcatcttatcgcattatgtttcattctaccaaccttag |
8519692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 307
Target Start/End: Original strand, 39075501 - 39075574
Alignment:
| Q |
234 |
tagcagattgtgcaattggatttggcaaagatgcaattggaggaaaatatggtgagatatatgaagtcactgat |
307 |
Q |
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||||||||||||| ||||||||||||||| ||||||||||||||| | ||||| | ||||||| ||| |||||| |
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| T |
39075501 |
tagcagattgtgccattggatttggcaaacatgcaattggaggaagagatggtaaaatatatgtagtaactgat |
39075574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 7593887 - 7593833
Alignment:
| Q |
232 |
actagcagattgtgcaattggatttggcaaagatgcaattggaggaaaatatggt |
286 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||| || ||| ||||| |
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| T |
7593887 |
actagctgattgtgcaattggatttggaaaagatgcaattggtggtaaaaatggt |
7593833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 55374129 - 55374076
Alignment:
| Q |
234 |
tagcagattgtgcaattggatttggcaaagatgcaattggaggaaaatatggtg |
287 |
Q |
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|||| |||||||| ||||| |||||||||||| |||||||||| |||||||||| |
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| T |
55374129 |
tagctgattgtgctattggttttggcaaagattcaattggaggcaaatatggtg |
55374076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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