View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10427_low_15 (Length: 280)
Name: NF10427_low_15
Description: NF10427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10427_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 40 - 265
Target Start/End: Complemental strand, 5564197 - 5563973
Alignment:
| Q |
40 |
ttattgaaatataccaatacaaaagtgtagatatataataatgatcgttgattaaaaatgctagcatgatggaatgtttgaaagcggcagcatttgtcaa |
139 |
Q |
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| T |
5564197 |
ttattgaaatatacca-tacaaaagtgtagatatataataatgatcgttgattaaaaatgctagcatgatggaatgtttgaaagcggcagcatttgtcaa |
5564099 |
T |
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| Q |
140 |
taaaggaagccattccaacaactggtcacacaatattgatgaagcaatacataggaaccaaaatgttgttgacaaaatgtccaaattaaatgcttttgaa |
239 |
Q |
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| T |
5564098 |
taaaggaagccattccaacaactggtcacacaatattgatgaagcaatacataggaaccaaaatgttgttgacaaaatgtccaaattaaatgcttttgaa |
5563999 |
T |
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| Q |
240 |
aaataacatcacagctatggaaatcc |
265 |
Q |
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| T |
5563998 |
aaataacatcacagatatggaaatcc |
5563973 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1036927 - 1036877
Alignment:
| Q |
1 |
taggcagatggcatgatctatttaaattgagatggtttcttattgaaatat |
51 |
Q |
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| T |
1036927 |
taggcaaatggcatgatctatttcaattgacatggtttcttattgatatat |
1036877 |
T |
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