View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10427_low_21 (Length: 238)
Name: NF10427_low_21
Description: NF10427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10427_low_21 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 23 - 193
Target Start/End: Original strand, 40725245 - 40725417
Alignment:
| Q |
23 |
gcatttcattataattagatagcattgcnnnnnnntatatagatagcgaaacagtaaacactttaaaccaatagaactaaatgctaatgtgatttagctt |
122 |
Q |
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| T |
40725245 |
gcatttcattataattagatagcattgtaaaaaaaaatatagatagctaaacaataaacacattaaaccaatagaactaaatgctaatgtgatttagctt |
40725344 |
T |
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| Q |
123 |
atgttttgtccatctatctctaattataagc--nnnnnnnattataaattgcatacttaaatataagtcccta |
193 |
Q |
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| T |
40725345 |
atgttttgtccatctgtctctaattataagctttttttttattataaattgcatacttaaatataagttccta |
40725417 |
T |
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Target: scaffold0007 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 63 - 191
Target Start/End: Original strand, 255507 - 255635
Alignment:
| Q |
63 |
agatagcgaaacagtaaacactttaaaccaatagaactaaatgctaatgtgatttagcttatgttttgtccatctatctctaattataagcnnnnnnnat |
162 |
Q |
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| T |
255507 |
agatagctaaacagtaaacacattaaaccaatagaactaaatgctaatgtgatttagcttatgttttctccatctgtctctaattataagctttttttat |
255606 |
T |
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| Q |
163 |
tataaattgcatacttaaatataagtccc |
191 |
Q |
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| T |
255607 |
tataaatttcatacttaaatataagtccc |
255635 |
T |
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Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 21055405 - 21055498
Alignment:
| Q |
59 |
atatagatagcgaaacagtaaacactttaaaccaatagaactaaatgctaatgtgatttagcttatgttttgtccatctatctctaattataag |
152 |
Q |
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| T |
21055405 |
atatagatagctaaacagtaaacacattaaaccaatagaactaaatgctaatgtgatttagcttatgttttgtccatctgtctctaattataag |
21055498 |
T |
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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 949547 - 949351
Alignment:
| Q |
1 |
attctgacatataacnnnnnnngcatttcattataattagatagcattgcnnnnnnntatatagatagcgaaacagtaa----acactttaaaccaatag |
96 |
Q |
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| T |
949547 |
attctgacatataactttttttgcatttcattataattagatagcattgtaaaaaaaaatatagatagctatacagtaagtaaacacattagaccaatag |
949448 |
T |
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| Q |
97 |
aactaaatgctaatgtgatttagcttatgttttgtccatctatctctaattataagcnnnnnnnattataaattgcatacttaaatataagtcccta |
193 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||| |
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| T |
949447 |
aactaaatgctaatatgatttagcttatgttttgtccatctatctctaattataaactttgtttattataaattgcatactttaatataagtcccta |
949351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 14172053 - 14171976
Alignment:
| Q |
75 |
agtaaacactttaaaccaatagaactaaatgctaatgtgatttagcttatgttttgtccatctatctctaattataag |
152 |
Q |
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| T |
14172053 |
agtaaacacattaagccaatataactaaatgctaatgtgatttagcttatgttttgtccatccgtctctaattataag |
14171976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 14171579 - 14171547
Alignment:
| Q |
161 |
attataaattgcatacttaaatataagtcccta |
193 |
Q |
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| T |
14171579 |
attataaattgcatacttaaatataagtcccta |
14171547 |
T |
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Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 59 - 193
Target Start/End: Complemental strand, 7573772 - 7573642
Alignment:
| Q |
59 |
atatagatagcgaaacagtaaacactttaaaccaatagaactaaatgctaatgtgatttagcttatgttttgtccatctatctctaattataagc-nnnn |
157 |
Q |
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| T |
7573772 |
atatagatagctaaacaataaacacattaaaccaatagaactaaatgctaatgtgat-----ttatgttttgtccatctgtctctaattataaccttttt |
7573678 |
T |
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| Q |
158 |
nnnattataaattgcatacttaaatataagtcccta |
193 |
Q |
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| T |
7573677 |
tttattataaattgcatacttaaatataagtcccta |
7573642 |
T |
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