View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10427_low_5 (Length: 454)

Name: NF10427_low_5
Description: NF10427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10427_low_5
NF10427_low_5
[»] chr2 (21 HSPs)
chr2 (281-447)||(33366314-33366480)
chr2 (73-247)||(36949018-36949194)
chr2 (24-158)||(33366923-33367058)
chr2 (71-177)||(17474870-17474977)
chr2 (71-177)||(45153862-45153969)
chr2 (96-177)||(39447138-39447220)
chr2 (71-172)||(15995184-15995287)
chr2 (94-177)||(25217884-25217968)
chr2 (71-158)||(36874980-36875068)
chr2 (94-167)||(4268332-4268406)
chr2 (95-247)||(34517006-34517159)
chr2 (94-177)||(33452537-33452621)
chr2 (71-177)||(44465798-44465906)
chr2 (71-177)||(32187940-32188047)
chr2 (96-177)||(41510524-41510606)
chr2 (71-152)||(42894378-42894460)
chr2 (19-156)||(25715362-25715501)
chr2 (92-177)||(9847517-9847603)
chr2 (92-177)||(5507392-5507480)
chr2 (71-158)||(41854970-41855058)
chr2 (24-63)||(9847235-9847274)
[»] chr5 (33 HSPs)
chr5 (20-227)||(26319005-26319213)
chr5 (41-247)||(37094962-37095167)
chr5 (70-177)||(25746964-25747071)
chr5 (71-227)||(15799112-15799270)
chr5 (77-227)||(6156618-6156770)
chr5 (97-247)||(26190400-26190552)
chr5 (98-247)||(27212575-27212726)
chr5 (94-247)||(33487478-33487632)
chr5 (71-158)||(14111854-14111942)
chr5 (24-227)||(36359608-36359820)
chr5 (71-227)||(4064796-4064954)
chr5 (71-170)||(39524721-39524821)
chr5 (71-177)||(20891551-20891658)
chr5 (71-169)||(40620066-40620165)
chr5 (94-167)||(38692881-38692955)
chr5 (70-158)||(34440691-34440779)
chr5 (90-177)||(38871609-38871697)
chr5 (103-177)||(12465214-12465289)
chr5 (77-247)||(15957618-15957788)
chr5 (97-177)||(38372247-38372328)
chr5 (24-138)||(38640700-38640819)
chr5 (70-138)||(24203759-24203827)
chr5 (94-177)||(28083477-28083561)
chr5 (188-237)||(34440621-34440670)
chr5 (92-171)||(26095035-26095115)
chr5 (188-247)||(1350459-1350518)
chr5 (71-138)||(29862590-29862657)
chr5 (189-247)||(28445609-28445667)
chr5 (69-158)||(37183856-37183946)
chr5 (118-219)||(31929229-31929331)
chr5 (92-171)||(32842069-32842149)
chr5 (71-169)||(8032217-8032316)
chr5 (94-154)||(31221438-31221499)
[»] chr1 (31 HSPs)
chr1 (26-158)||(30829497-30829629)
chr1 (28-158)||(24471347-24471478)
chr1 (70-247)||(18583619-18583798)
chr1 (24-177)||(43319219-43319379)
chr1 (94-246)||(49786175-49786329)
chr1 (88-169)||(44573189-44573271)
chr1 (97-247)||(23442643-23442795)
chr1 (70-177)||(33611485-33611593)
chr1 (70-177)||(40908009-40908117)
chr1 (71-177)||(32817687-32817794)
chr1 (90-172)||(42545948-42546031)
chr1 (71-177)||(45567952-45568059)
chr1 (92-227)||(6223834-6223972)
chr1 (71-227)||(34162797-34162956)
chr1 (94-230)||(41584769-41584907)
chr1 (71-177)||(40650751-40650858)
chr1 (95-161)||(49677475-49677542)
chr1 (71-231)||(17000300-17000461)
chr1 (90-247)||(38950186-38950333)
chr1 (105-247)||(27794760-27794903)
chr1 (96-170)||(28866732-28866806)
chr1 (94-177)||(15069941-15070025)
chr1 (95-158)||(32542391-32542455)
chr1 (188-247)||(24471499-24471558)
chr1 (24-63)||(43319008-43319047)
chr1 (77-177)||(45046933-45047033)
chr1 (109-177)||(52744931-52745000)
chr1 (19-55)||(9445909-9445945)
chr1 (71-167)||(7011195-7011293)
chr1 (275-305)||(30829739-30829769)
chr1 (24-56)||(800620-800652)
[»] chr6 (15 HSPs)
chr6 (70-237)||(32035028-32035197)
chr6 (71-247)||(5699464-5699641)
chr6 (96-247)||(33413448-33413600)
chr6 (71-177)||(17264386-17264493)
chr6 (71-247)||(24604438-24604617)
chr6 (90-177)||(7412804-7412892)
chr6 (71-227)||(23406721-23406879)
chr6 (71-170)||(14587636-14587736)
chr6 (71-166)||(3717359-3717455)
chr6 (79-177)||(4508386-4508485)
chr6 (71-177)||(2813300-2813409)
chr6 (92-171)||(9905100-9905180)
chr6 (20-54)||(17500967-17501001)
chr6 (97-137)||(5638879-5638919)
chr6 (96-177)||(1945630-1945712)
[»] chr7 (22 HSPs)
chr7 (90-247)||(3304853-3305013)
chr7 (70-176)||(8154876-8154983)
chr7 (71-177)||(43737100-43737207)
chr7 (70-247)||(47202399-47202578)
chr7 (71-227)||(42925717-42925875)
chr7 (71-177)||(24042264-24042371)
chr7 (71-167)||(19225674-19225771)
chr7 (71-231)||(28230544-28230705)
chr7 (71-177)||(3936084-3936191)
chr7 (71-172)||(37518371-37518473)
chr7 (94-177)||(36408347-36408431)
chr7 (133-249)||(28346051-28346167)
chr7 (90-176)||(33574129-33574216)
chr7 (70-177)||(36629181-36629289)
chr7 (94-237)||(31642956-31643101)
chr7 (71-177)||(6467671-6467780)
chr7 (71-177)||(36468613-36468719)
chr7 (70-158)||(33151201-33151292)
chr7 (188-247)||(8214703-8214762)
chr7 (71-138)||(31985594-31985661)
chr7 (92-138)||(26555138-26555184)
chr7 (99-167)||(42877149-42877218)
[»] chr3 (32 HSPs)
chr3 (70-248)||(47301923-47302103)
chr3 (71-165)||(34821419-34821514)
chr3 (24-247)||(48303896-48304127)
chr3 (71-247)||(51258308-51258485)
chr3 (71-227)||(3902882-3903040)
chr3 (71-172)||(39149791-39149892)
chr3 (70-172)||(35142055-35142158)
chr3 (90-177)||(3937364-3937452)
chr3 (71-169)||(47740008-47740107)
chr3 (71-172)||(38977824-38977926)
chr3 (94-227)||(2358721-2358857)
chr3 (94-167)||(501240-501314)
chr3 (70-246)||(28872910-28873087)
chr3 (97-172)||(33438503-33438578)
chr3 (90-177)||(45244365-45244453)
chr3 (95-247)||(49096327-49096480)
chr3 (94-177)||(51540713-51540797)
chr3 (71-177)||(50716228-50716335)
chr3 (71-177)||(50796512-50796619)
chr3 (97-177)||(3352168-3352249)
chr3 (71-231)||(30721881-30722048)
chr3 (97-158)||(52777226-52777287)
chr3 (188-247)||(52777146-52777205)
chr3 (71-177)||(46622860-46622968)
chr3 (111-177)||(34821512-34821579)
chr3 (188-246)||(32024878-32024936)
chr3 (70-123)||(43473044-43473097)
chr3 (19-177)||(44085439-44085605)
chr3 (24-63)||(45244691-45244730)
chr3 (24-138)||(32024999-32025119)
chr3 (125-177)||(47123082-47123135)
chr3 (125-177)||(47130448-47130501)
[»] chr8 (20 HSPs)
chr8 (70-177)||(31519967-31520075)
chr8 (70-247)||(21004295-21004473)
chr8 (71-177)||(3094657-3094764)
chr8 (71-177)||(27928017-27928124)
chr8 (24-226)||(41530595-41530806)
chr8 (28-177)||(7971024-7971180)
chr8 (71-177)||(44106199-44106306)
chr8 (77-177)||(8885535-8885636)
chr8 (71-177)||(37248534-37248641)
chr8 (101-173)||(34853309-34853382)
chr8 (61-177)||(36404222-36404337)
chr8 (77-172)||(28916764-28916860)
chr8 (92-171)||(35676635-35676715)
chr8 (71-177)||(42280967-42281077)
chr8 (24-63)||(24627666-24627705)
chr8 (77-138)||(40994808-40994869)
chr8 (95-177)||(16310575-16310658)
chr8 (94-158)||(11698385-11698450)
chr8 (201-230)||(41328502-41328531)
chr8 (24-56)||(31234546-31234578)
[»] scaffold0137 (1 HSPs)
scaffold0137 (71-177)||(9573-9680)
[»] chr4 (28 HSPs)
chr4 (70-247)||(23523819-23523998)
chr4 (70-227)||(49396941-49397100)
chr4 (94-177)||(29822603-29822687)
chr4 (94-237)||(32441734-32441879)
chr4 (71-232)||(38536098-38536261)
chr4 (92-246)||(38416479-38416635)
chr4 (103-247)||(6228919-6229065)
chr4 (96-172)||(17933238-17933315)
chr4 (70-158)||(34972867-34972956)
chr4 (69-177)||(48319139-48319247)
chr4 (72-247)||(6003748-6003927)
chr4 (71-172)||(46440350-46440452)
chr4 (71-227)||(3703326-3703484)
chr4 (71-227)||(25539024-25539182)
chr4 (71-177)||(19835504-19835611)
chr4 (77-177)||(7931642-7931743)
chr4 (71-167)||(25491471-25491568)
chr4 (90-170)||(25752539-25752620)
chr4 (69-177)||(54631537-54631646)
chr4 (71-177)||(2506107-2506215)
chr4 (71-177)||(40703648-40703755)
chr4 (71-166)||(8106387-8106483)
chr4 (188-247)||(41413270-41413329)
chr4 (115-177)||(50392529-50392592)
chr4 (188-247)||(34972787-34972846)
chr4 (71-133)||(31582498-31582560)
chr4 (112-172)||(53894108-53894169)
chr4 (94-126)||(41413199-41413231)
[»] scaffold0027 (1 HSPs)
scaffold0027 (71-169)||(142039-142138)
[»] scaffold0508 (1 HSPs)
scaffold0508 (94-167)||(3494-3568)
[»] scaffold0182 (1 HSPs)
scaffold0182 (71-177)||(23098-23205)
[»] scaffold0016 (1 HSPs)
scaffold0016 (24-63)||(205834-205873)


Alignment Details
Target: chr2 (Bit Score: 151; Significance: 1e-79; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 281 - 447
Target Start/End: Complemental strand, 33366480 - 33366314
Alignment:
Q  281 atagggtgggaaaagtaatactcccgaaagaatgaaggtactataacaacaaaaatggaagatagagagattttgaattttgcttaataacgaaatttac 380  Q
    ||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33366480 ataggatggaaaaagtaatactcctgaaagaatgaaggtactataacaacaaaaatggaagatagagagattttgaattttgcttaataacgaaatttac 33366381  T
Q  381 tacatttattgatatattacgaaattactgtttaacccaagtctctttctcactctatttcttctca 447  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33366380 tacatttattgatatattacgaagttactgtttaacccaagtctctttctcactctatttcttctca 33366314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 73 - 247
Target Start/End: Original strand, 36949018 - 36949194
Alignment:
Q  73 aaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccg 171  Q
    |||||||||| ||| | ||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||   ||||||||||| ||||||||||||    
T  36949018 aaatggtgtttagggggtttccggattatgtaatccgaaaacatcatgtaacgcgccctattttttgaagtttgcagattacaaaatccggaaaaatccg 36949117  T
Q  172 taact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
    ||||| |       || |||||||||||||||||| |||| | |||||||||||| | ||| ||||||  |||||||    
T  36949118 taactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatctggaaacctcaaatgcattttt 36949194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 33367058 - 33366923
Alignment:
Q  24 ttggtgctggtgttgtccggattacgtaatccggattgcaccatagaaaaaat-ggtgttcaggcgattttcggattatgtaatccgaaaacatcatgta 122  Q
    |||||||||||| | ||||||||||||||||||| ||||||||| |||||||  |||||| ||| | |||||||||||||||||||| ||| ||||||||    
T  33367058 ttggtgctggtgctatccggattacgtaatccggtttgcaccatggaaaaaaaaggtgttaagggggttttcggattatgtaatccggaaatatcatgta 33366959  T
Q  123 acgcgctctattttttaagtttctggattacaaaat 158  Q
    |||||   ||||||| ||||||  ||||||||||||    
T  33366958 acgcgtcttatttttgaagttttcggattacaaaat 33366923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 17474870 - 17474977
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    |||||| ||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| ||||||||||    
T  17474870 aaaaattgtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttaaagtttccggattacaaaatccggaaaaatc 17474969  T
Q  170 cgtaactc 177  Q
    ||| ||||    
T  17474970 cgttactc 17474977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 45153862 - 45153969
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| |||||||  ||||||||||||| |||||| |    
T  45153862 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccagattacaaaattcagaaaaacc 45153961  T
Q  170 cgtaactc 177  Q
    ||| ||||    
T  45153962 cgttactc 45153969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 39447220 - 39447138
Alignment:
Q  96 gattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 177  Q
    |||||||||||||||||||||||||||| |||| ||||||||| ||||||  |||||||||||| ||||||||||||| ||||    
T  39447220 gattatgtaatccgaaaacatcatgtaatgcgccctattttttgaagttttcggattacaaaatccggaaaaatccgttactc 39447138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 71 - 172
Target Start/End: Original strand, 15995184 - 15995287
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt--aagtttctggattacaaaattcggaaaaat 168  Q
    ||||| |||||| ||| | |||||||||||||||||||| |||||||||| ||||||| |||||||||  |||||||  ||||||||||| ||||||||     
T  15995184 aaaaagggtgtttagggggttttcggattatgtaatccggaaacatcatgcaacgcgccctatttttttgaagtttcccgattacaaaatccggaaaaac 15995283  T
Q  169 ccgt 172  Q
    ||||    
T  15995284 ccgt 15995287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 25217884 - 25217968
Alignment:
Q  94 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 177  Q
    |||||||||||||||| |||||||||||||||| | ||||||||| ||||||| |||||||||||| || |||||||||| ||||    
T  25217884 cggattatgtaatccggaaacatcatgtaacgcaccctattttttgaagtttccggattacaaaatccgaaaaaatccgttactc 25217968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 71 - 158
Target Start/End: Complemental strand, 36875068 - 36874980
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaat 158  Q
    |||||||||||||||  | ||| |||||||||||||||| |||||||||||||||||  ||||||||| ||||||| ||||||||||||    
T  36875068 aaaaatggtgttcagagggtttccggattatgtaatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaat 36874980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 4268332 - 4268406
Alignment:
Q  94 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaa 167  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||| || |||||    
T  4268332 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttttggattacaaaatccgaaaaaa 4268406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 95 - 247
Target Start/End: Complemental strand, 34517159 - 34517006
Alignment:
Q  95 ggattatgtaatccgaaaacatcatgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactc-nnnnnnnactctata 192  Q
    ||||||||||||||||||| |||||||||||||| ||||||||| || ||| | ||||||||||| || |||||| ||||||||        ||  ||||    
T  34517159 ggattatgtaatccgaaaa-atcatgtaacgcgccctattttttgagatttttcgattacaaaatccgaaaaaattcgtaactcattttttcaccgtata 34517061  T
Q  193 acaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
    ||||||||||||| || ||| || |||||||||||||||  |||||| |||||||    
T  34517060 acaaaggaaaacaccagttcggaatatgaaatccgaaaacttcaaaggcattttt 34517006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 33452537 - 33452621
Alignment:
Q  94 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 177  Q
    |||||||||| ||||| |||||||||||||||||| ||||||||| ||||||| | |||||||||| | ||||||||||| ||||    
T  33452537 cggattatgtgatccggaaacatcatgtaacgcgccctattttttgaagtttccgaattacaaaatccagaaaaatccgttactc 33452621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 44465798 - 44465906
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaac-atcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 168  Q
    ||||| |||||| ||| | ||| |||| ||||||||||  |||| |||||||||||||| ||||||||| ||||||| |||||||||||| |||||||||    
T  44465798 aaaaagggtgtttagggggtttccggagtatgtaatccataaactatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaat 44465897  T
Q  169 ccgtaactc 177  Q
    |||| ||||    
T  44465898 ccgttactc 44465906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 32187940 - 32188047
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||||||||||  || | ||| |||||||||||||||| |||||||||||||| ||| ||||||||| |||||||  ||||||||||| | |||||| |    
T  32187940 aaaaatggtgtttcgggggtttccggattatgtaatccggaaacatcatgtaactcgccctattttttgaagtttccagattacaaaatccagaaaaacc 32188039  T
Q  170 cgtaactc 177  Q
    ||| ||||    
T  32188040 cgttactc 32188047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 41510524 - 41510606
Alignment:
Q  96 gattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 177  Q
    |||||||||||||  |||||||||||||||||| ||||||||| ||||||| ||||||| ||||  |||||||||||| ||||    
T  41510524 gattatgtaatccagaaacatcatgtaacgcgccctattttttgaagtttccggattacgaaatctggaaaaatccgttactc 41510606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 42894460 - 42894378
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggatta 152  Q
    |||||||||||| ||| | ||| |||||||||||||||| |||||||||||||||||  ||| ||||||||||||| ||||||    
T  42894460 aaaaatggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgtcctatttttttaagtttccggatta 42894378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 25715501 - 25715362
Alignment:
Q  19 tagatttggtgctggtgttgtccggattacgtaatccggatt------gcaccatagaaaaaatggtgttcaggcgattttcggattatgtaatccgaaa 112  Q
    |||| |||||| ||||||||||||||||||||||||||||||      |||||||  |||||||||||||       | |||||||||||||||||||||    
T  25715501 tagaattggtgttggtgttgtccggattacgtaatccggattgcatcagcaccatgaaaaaaatggtgtt-----tgtgttcggattatgtaatccgaaa 25715407  T
Q  113 acatcatgtaacgcgctctattttttaag-tttctggattacaaa 156  Q
    | |||| ||||||||| |||| |||| || ||| |||||||||||    
T  25715406 aaatcaggtaacgcgccctatcttttgagatttttggattacaaa 25715362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 9847517 - 9847603
Alignment:
Q  92 ttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactc 177  Q
    ||||||||||||||| |||||| |||||||||||||| | ||||||| || |||  ||||||||||||  ||||||||| |||||||    
T  9847517 ttcggattatgtaatacgaaaaaatcatgtaacgcgcccaattttttgagattttcggattacaaaatctggaaaaatcagtaactc 9847603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 177
Target Start/End: Complemental strand, 5507480 - 5507392
Alignment:
Q  92 ttcggattatgtaatccgaaaaca--tcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 177  Q
    |||||||||| ||||||||||| |  ||||||||||||   |||||||| |||||| |||||||||||||||| ||||||| |||||||    
T  5507480 ttcggattatataatccgaaaaaaaatcatgtaacgcgtcttattttttgaagtttttggattacaaaattcgaaaaaatctgtaactc 5507392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 158
Target Start/End: Original strand, 41854970 - 41855058
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaat 158  Q
    ||||| |||||| ||| | ||| ||||| |||||||||| |||||||||||||| | | ||||||||| ||||||| ||||||||||||    
T  41854970 aaaaagggtgtttagggggtttccggatcatgtaatccggaaacatcatgtaacacaccctattttttgaagtttccggattacaaaat 41855058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 9847235 - 9847274
Alignment:
Q  24 ttggtgctggtgttgtccggattacgtaatccggattgca 63  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  9847235 ttggtgttggtgttgtccagattacgtaatccggattgca 9847274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 26319213 - 26319005
Alignment:
Q  20 agatttggtgctggtgttgtccggattacgtaatccggattgcaccatagaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcat 119  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| |||||| ||| | |||||||||||||||||||| |||||||||    
T  26319213 agatttggtgctggtgctgtacggattacgtaatccggattgcaccatggaaaaaagggtgtttagggggttttcggattatgtaatccggaaacatcat 26319114  T
Q  120 gtaacgcgctctattttttaagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagatta 218  Q
    ||||||| | |||||||  ||||||| |||| ||||||| ||||||||||||||||| |       || |||||||||||||||||| |||| |  ||||    
T  26319113 gtaacgcaccctattttggaagtttccggataacaaaatccggaaaaatccgtaactccatttttcaccctataacaaaggaaaacaccattccgaatta 26319014  T
Q  219 tgaaatccg 227  Q
    |||||||||    
T  26319013 tgaaatccg 26319005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 41 - 247
Target Start/End: Original strand, 37094962 - 37095167
Alignment:
Q  41 cggattacgtaatccggattgcaccatagaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaa 140  Q
    ||||||||||||||||||||||||||| ||||||| |||||| | | | ||||||||||  |||||||| ||||||||||||||||||  ||||||||||    
T  37094962 cggattacgtaatccggattgcaccatggaaaaaagggtgtttaaggg-ttttcggatttggtaatccggaaacatcatgtaacgcgccttattttttaa 37095060  T
Q  141 gtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaag 239  Q
    ||||  |||||||||||| ||||||||||||||||| |       || |||||||||||| ||||| |||| | ||||||||||| |||||| ||||| |    
T  37095061 gttttcggattacaaaatccggaaaaatccgtaactccatttttcaccctataacaaagg-aaacaccattccggattatgaaattcgaaaacctcaagg 37095159  T
Q  240 acattttt 247  Q
     |||||||    
T  37095160 gcattttt 37095167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 70 - 177
Target Start/End: Complemental strand, 25747071 - 25746964
Alignment:
Q  70 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaattcggaaaaatc 169  Q
    ||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||| ||||| ||||||||||    
T  25747071 aaaaaatggtgtttaggggatttccggattatgtaatccgaaaacatcatgtaacgcgccctatttttgaagtttccggattagaaaatccggaaaaatc 25746972  T
Q  170 cgtaactc 177  Q
    ||| ||||    
T  25746971 cgttactc 25746964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 71 - 227
Target Start/End: Complemental strand, 15799270 - 15799112
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | |||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| |||||||| |    
T  15799270 aaaaagggtgtttagggggttttcggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacc 15799171  T
Q  170 cgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 227  Q
    ||||||| |       || |||||||||||||||| | |||| | ||||||||||||||    
T  15799170 cgtaactccatttttcaccctataacaaaggaaaataccattccggattatgaaatccg 15799112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 77 - 227
Target Start/End: Complemental strand, 6156770 - 6156618
Alignment:
Q  77 ggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaac 175  Q
    |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| |||||||| |||||||    
T  6156770 ggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgtaac 6156671  T
Q  176 t-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 227  Q
    | |       ||  ||||||||||||||||| |||| | ||||||||||||||    
T  6156670 tccatttttcaccatataacaaaggaaaacaccattccggattatgaaatccg 6156618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 97 - 247
Target Start/End: Original strand, 26190400 - 26190552
Alignment:
Q  97 attatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctataac 194  Q
    |||||||||||||||||||||||||||||| | ||||||||| ||||||| |||||||||||| ||||||||||||||||| |       || | ||||     
T  26190400 attatgtaatccgaaaacatcatgtaacgcaccctattttttgaagtttccggattacaaaatccggaaaaatccgtaactccatttttcacccgataag 26190499  T
Q  195 aaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
    ||||||||||| |||| ||||||||||| || | ||| ||||| |||||||||    
T  26190500 aaaggaaaacaccattccagattatgaagtctggaaacctcaaggacattttt 26190552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 98 - 247
Target Start/End: Complemental strand, 27212726 - 27212575
Alignment:
Q  98 ttatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttct-ggattacaaaattcggaaaaatccgtaactcnnnnnnn-actctataaca 195  Q
    |||||||||||||||| |||||||||||| | ||||||||| || || | |||||||||||| || ||||| |||||||||        || ||||||||    
T  27212726 ttatgtaatccgaaaaaatcatgtaacgcaccctattttttgagattttcggattacaaaatccgaaaaaacccgtaactcattttttcaccctataaca 27212627  T
Q  196 aaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
    ||||||||||||| ||| ||||||||||||||||||| |||||| |||||||    
T  27212626 aaggaaaacatcagttcggattatgaaatccgaaaatttcaaaggcattttt 27212575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 94 - 247
Target Start/End: Complemental strand, 33487632 - 33487478
Alignment:
Q  94 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctat 191  Q
    |||||||||||| ||||||||||||| |||||||| ||||||||| ||||||  ||||||||||||||||||||| |||||||| |       || || |    
T  33487632 cggattatgtaacccgaaaacatcatataacgcgccctattttttgaagttttcggattacaaaattcggaaaaacccgtaactccatttttcaccctgt 33487533  T
Q  192 aacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
    |||||||||||||| |||| | |||||||||||||| ||| ||||| |||||||||    
T  33487532 aacaaaggaaaacaccattccggattatgaaatccggaaa-ctcaaggacattttt 33487478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 71 - 158
Target Start/End: Complemental strand, 14111942 - 14111854
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaat 158  Q
    ||||| |||||| ||| ||||||| ||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  14111942 aaaaagggtgtttaggggattttcagattatgtaatccaaaaacatcatgtaacgcgccctattttttgaagtttctggattacaaaat 14111854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 227
Target Start/End: Original strand, 36359608 - 36359820
Alignment:
Q  24 ttggtgctggtgttgtccggattacgtaatccggattgca------ccat-agaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacat 116  Q
    |||||| |||||||||| ||||||||||||| ||||||||      |||| | |||||| |||||| ||| | ||||| |||||||||||||||||| ||    
T  36359608 ttggtgatggtgttgtctggattacgtaatctggattgcatcaacaccatgaaaaaaaaaggtgtttagggggttttcagattatgtaatccgaaaaaat 36359707  T
Q  117 catgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactcnnnnnnnactctataacaaaggaaaaca-tcatttcag 214  Q
    ||||| |||||  ||||||||| || ||||||||||||||||| || |||| ||||||||||       || || ||||||| |||||||  |||| |||    
T  36359708 catgttacgcgtcctattttttgagatttctggattacaaaatccgaaaaattccgtaactcatttttcaccctttaacaaaagaaaacacccattccag 36359807  T
Q  215 attatgaaatccg 227  Q
    |||||||||||||    
T  36359808 attatgaaatccg 36359820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 71 - 227
Target Start/End: Original strand, 4064796 - 4064954
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | ||| |||||||||||||||| ||||||||| |||| ||| ||||||||| ||||||| |||||||| ||| |||||||| |    
T  4064796 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatctaacacgccctattttttaaagtttccggattacataatccggaaaaacc 4064895  T
Q  170 cgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 227  Q
    ||||||| |       || |||||||||||||||||| |||| | ||||||||||||||    
T  4064896 cgtaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatccg 4064954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 71 - 170
Target Start/End: Complemental strand, 39524821 - 39524721
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | ||| || |||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||||||||| ||||||||||    
T  39524821 aaaaagggtgtttagggggtttccgaattatgtaatccgaaaacatcatgtaacacgccctatttttttaagtttccggattacaaaatccggaaaaatc 39524722  T
Q  170 c 170  Q
    |    
T  39524721 c 39524721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 71 - 177
Target Start/End: Complemental strand, 20891658 - 20891551
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | ||||||||||||||||| || ||||||||||||||  || ||||||||| ||||||| |||||||||||| ||||||||||    
T  20891658 aaaaagggtgtttagggggttttcggattatgtaattcggaaacatcatgtaacatgccctattttttgaagtttccggattacaaaatccggaaaaatc 20891559  T
Q  170 cgtaactc 177  Q
    ||| ||||    
T  20891558 cgttactc 20891551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 40620066 - 40620165
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||||| |||| ||| | ||| |||||||||||||||||||||||||| ||||| || ||||||||| ||||||| |||||||||||| ||||||||||    
T  40620066 aaaaatgatgtttagggggtttccggattatgtaatccgaaaacatcatataacgtgccctattttttgaagtttccggattacaaaatccggaaaaatc 40620165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 38692881 - 38692955
Alignment:
Q  94 cggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaa 167  Q
    |||||||||||||||| |||||||| ||||||||| ||| ||||||||||||| |||||||||||||||||||||    
T  38692881 cggattatgtaatccggaaacatcacgtaacgcgccctatttttttaagtttccggattacaaaattcggaaaaa 38692955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 34440779 - 34440691
Alignment:
Q  70 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaat 158  Q
    |||||| |||||| ||| | ||||||||||||| ||||||||||||||||||||||||  |||||||| ||||||  ||||||||||||    
T  34440779 aaaaaagggtgtttagggggttttcggattatgcaatccgaaaacatcatgtaacgcgtcctatttttgaagttttcggattacaaaat 34440691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 90 - 177
Target Start/End: Complemental strand, 38871697 - 38871609
Alignment:
Q  90 ttttcggattatgtaatccgaaaacatcatgtaacgcgctctatttt-ttaagtttctggattacaaaattcggaaaaatccgtaactc 177  Q
    |||||||||||||||||||| |||||||||||||||| | ||||||| | ||||||  |||||||||||| ||||||||||||| ||||    
T  38871697 ttttcggattatgtaatccggaaacatcatgtaacgccccctattttatgaagttttcggattacaaaatccggaaaaatccgttactc 38871609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 12465214 - 12465289
Alignment:
Q  103 taatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 177  Q
    ||||||| |||||||||||||| ||| ||||||||| ||||||| |||||||||||| ||||||||||||||||||    
T  12465214 taatccggaaacatcatgtaacacgccctattttttgaagtttccggattacaaaatccggaaaaatccgtaactc 12465289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 77 - 247
Target Start/End: Complemental strand, 15957788 - 15957618
Alignment:
Q  77 ggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttt-taagtttctggattacaaaattcggaaaaatccgtaac 175  Q
    |||||| ||| | ||| |||||||| ||||||| |||||||||||||  ||| ||||||||  ||||||| | |||||||||| ||||||||||| | ||    
T  15957788 ggtgtttagggggtttccggattatttaatccggaaacatcatgtaatacgccctatttttcgaagtttccgaattacaaaatccggaaaaatccattac 15957689  T
Q  176 tcnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
    ||       || || ||||||| ||||||| |||||| |||||| ||||||||||| ||||||| |||||||    
T  15957688 tcatttttcaccctttaacaaaagaaaacaccatttcggattataaaatccgaaaa-ctcaaaggcattttt 15957618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 97 - 177
Target Start/End: Complemental strand, 38372328 - 38372247
Alignment:
Q  97 attatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaatccgtaactc 177  Q
    ||||||||||||| |||||||||||||| ||| ||| ||||||||||||| |||||||||||| | ||||||||||| ||||    
T  38372328 attatgtaatccggaaacatcatgtaacccgccctatttttttaagtttccggattacaaaatccagaaaaatccgttactc 38372247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 38640819 - 38640700
Alignment:
Q  24 ttggtgctggtgttgtccggattacgtaatccggatt------gcaccatagaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatc 117  Q
    |||||| ||||| ||||||||||||||||||||||||      |||||||  |||||| |||||| ||| | | |||||||||||||||||||| | |||    
T  38640819 ttggtgttggtgctgtccggattacgtaatccggattgcatcagcaccatgaaaaaaagggtgtttagg-ggtgttcggattatgtaatccgaataaatc 38640721  T
Q  118 atgtaacgcgctctatttttt 138  Q
    || |||||||| |||||||||    
T  38640720 atttaacgcgccctatttttt 38640700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 24203759 - 24203827
Alignment:
Q  70 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt 138  Q
    |||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| |||||||||    
T  24203759 aaaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctatttttt 24203827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 28083477 - 28083561
Alignment:
Q  94 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 177  Q
    |||||||||||||||| ||| ||||||||| |||| ||||||||| || |||| |||||||||||| |||||||| |||| ||||    
T  28083477 cggattatgtaatccggaaatatcatgtaatgcgccctattttttgaattttccggattacaaaatccggaaaaacccgttactc 28083561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 34440670 - 34440621
Alignment:
Q  188 ctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaa 237  Q
    ||||||||||||||||||||||||||||||||||||| || ||| |||||    
T  34440670 ctataacaaaggaaaacatcatttcagattatgaaattcggaaacctcaa 34440621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 171
Target Start/End: Complemental strand, 26095115 - 26095035
Alignment:
Q  92 ttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccg 171  Q
    |||||||||||||||||||||| |  |||||||||||||||||||||   |||| |||||||||||||  | |||||||||    
T  26095115 ttcggattatgtaatccgaaaaaaatatgtaacgcgctctattttttgtggtttttggattacaaaatcagaaaaaatccg 26095035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 1350459 - 1350518
Alignment:
Q  188 ctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
    |||||||||||||||||| || ||| ||||||||||||||||||| |||| | |||||||    
T  1350459 ctataacaaaggaaaacaccagttcggattatgaaatccgaaaatttcaagggcattttt 1350518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 29862657 - 29862590
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt 138  Q
    |||||||||||| ||| | ||| |||||||||||||||| ||||||||  |||||||| |||||||||    
T  29862657 aaaaatggtgtttagggggtttccggattatgtaatccggaaacatcacctaacgcgccctatttttt 29862590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 28445609 - 28445667
Alignment:
Q  189 tataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
    |||||||||||||||||| | ||| |||| | ||||||||||||||||| |||||||||    
T  28445609 tataacaaaggaaaacattagttcggattttaaaatccgaaaatctcaaggacattttt 28445667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 158
Target Start/End: Original strand, 37183856 - 37183946
Alignment:
Q  69 gaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaat 158  Q
    ||||||| |||||| ||  | ||| |||||||||||||| ||||| ||||||||||| || ||||||||| |||||||  |||||||||||    
T  37183856 gaaaaaagggtgtttagagggtttccggattatgtaatctgaaaatatcatgtaacgtgccctattttttgaagtttcaagattacaaaat 37183946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 219
Target Start/End: Original strand, 31929229 - 31929331
Alignment:
Q  118 atgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactcnnnnnnnactctataacaaaggaaaacatcatttcagat 216  Q
    |||||| |||| ||||||||| || ||||||||||||||||| ||||||||||||| ||||       || || ||||||| |||||||||||| | |||    
T  31929229 atgtaatgcgccctattttttgaaatttctggattacaaaatccggaaaaatccgttactcatttttcaccctttaacaaaagaaaacatcattccggat 31929328  T
Q  217 tat 219  Q
    |||    
T  31929329 tat 31929331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 32842069 - 32842149
Alignment:
Q  92 ttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccg 171  Q
    ||||||||||||||||   ||| || || || ||||| ||||||||| ||||||| |||||||||||| ||||||||||||    
T  32842069 ttcggattatgtaatcttgaaaaattatctagcgcgccctattttttgaagtttccggattacaaaatccggaaaaatccg 32842149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 8032316 - 8032217
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | | |||||||||||||||||| ||| ||||||||| | || ||||||||| || ||||  ||||||||||| || |||||||    
T  8032316 aaaaagggtgtttaggaggtgttcggattatgtaatccggaaaaatcatgtaatgtgccctattttttgaaatttccagattacaaaatccgaaaaaatc 8032217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 31221438 - 31221499
Alignment:
Q  94 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattaca 154  Q
    |||||||||||||||  ||||||||||||||||||  |||||||| ||||||  ||||||||    
T  31221438 cggattatgtaatccagaaacatcatgtaacgcgccatattttttgaagttttcggattaca 31221499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 26 - 158
Target Start/End: Original strand, 30829497 - 30829629
Alignment:
Q  26 ggtgctggtgttgtccggattacgtaatccggattgcaccatagaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacg 125  Q
    |||||||||| |||||||||||||||||  |||||||||||| ||||||| |||||| ||| | ||||||||||||||||||||||||||||||||||||    
T  30829497 ggtgctggtgctgtccggattacgtaatttggattgcaccatggaaaaaagggtgtttagggggttttcggattatgtaatccgaaaacatcatgtaacg 30829596  T
Q  126 cgctctattttttaagtttctggattacaaaat 158  Q
    ||| |||||||| ||||||| ||||||||||||    
T  30829597 cgccctatttttgaagtttccggattacaaaat 30829629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 24471347 - 24471478
Alignment:
Q  28 tgctggtgttgtccggattacgtaatccggattgcaccatagaaaaaatggtgttcaggcga-ttttcggattatgtaatccgaaaacatcatgtaacgc 126  Q
    |||||||| |||||| ||||||||||||||||| |||||| ||||||| |||||| ||| |  |||||||||||||||||||| ||||||||||||||||    
T  24471347 tgctggtgctgtccgaattacgtaatccggattacaccatggaaaaaagggtgtttaggggggttttcggattatgtaatccggaaacatcatgtaacgc 24471446  T
Q  127 gctctattttttaagtttctggattacaaaat 158  Q
    || |||||||| ||||||||||||||||||||    
T  24471447 gccctatttttgaagtttctggattacaaaat 24471478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 70 - 247
Target Start/End: Original strand, 18583619 - 18583798
Alignment:
Q  70 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaat 168  Q
    |||||| |||||| ||| | ||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||  ||||||||||| ||||||| |    
T  18583619 aaaaaaaggtgtttagggggtttccggattatgtaatccgaaaacatcatgtaacgcgccctatttttttaagtttccagattacaaaatccggaaaagt 18583718  T
Q  169 ccgtaac-tcnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
    ||||||| ||       || |||||||||||||||||| |||| | |||||||||||||||||| ||||| | |||||||    
T  18583719 ccgtaacttcatttttcaccctataacaaaggaaaacaccattccggattatgaaatccgaaaacctcaagggcattttt 18583798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 24 - 177
Target Start/End: Original strand, 43319219 - 43319379
Alignment:
Q  24 ttggtgctggtgttgtccggattacgtaatccggattgca------ccatagaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatc 117  Q
    |||||| ||||| |||||||||||||||||||||||||||      ||||  ||||||  ||||| ||| | |||||||||||||||||||||||| |||    
T  43319219 ttggtgatggtgctgtccggattacgtaatccggattgcatcagcaccatgaaaaaaagagtgtttagggggttttcggattatgtaatccgaaaaaatc 43319318  T
Q  118 atgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactc 177  Q
    |||||||||||  |||||||| || |||| |||||||||||| ||||||||||||||||||    
T  43319319 atgtaacgcgccatatttttttagatttccggattacaaaatccggaaaaatccgtaactc 43319379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 94 - 246
Target Start/End: Complemental strand, 49786329 - 49786175
Alignment:
Q  94 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctat 191  Q
    |||||||||||||||| |||||||||||||||||  ||||||||| ||||||  ||||| |||||| ||||||||||| ||||| |       || ||||    
T  49786329 cggattatgtaatccggaaacatcatgtaacgcgtcctattttttaaagttttcggattgcaaaatccggaaaaatccataactccatttttcaccctat 49786230  T
Q  192 aacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacatttt 246  Q
    || |||||||||||  ||| |||||||||||||||| ||| ||||||||||||||    
T  49786229 aataaaggaaaacacaattccagattatgaaatccggaaacctcaaagacatttt 49786175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 88 - 169
Target Start/End: Original strand, 44573189 - 44573271
Alignment:
Q  88 gattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||| || |||||||    
T  44573189 gatttccggattatgtaatccgaaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccgaaaaaatc 44573271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 247
Target Start/End: Complemental strand, 23442795 - 23442643
Alignment:
Q  97 attatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctataac 194  Q
    ||||| ||||||| |||||||||||||||||| ||||||||| |||||||  ||||| ||||| ||||||||||||||||| |       ||  ||||||    
T  23442795 attatataatccggaaacatcatgtaacgcgccctattttttgaagtttccagattataaaatccggaaaaatccgtaactccatttttcaccttataac 23442696  T
Q  195 aaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
    |||||||||||||||| | ||| |||||||||| ||| ||||| | |||||||    
T  23442695 aaaggaaaacatcattccggataatgaaatccggaaacctcaagggcattttt 23442643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 70 - 177
Target Start/End: Original strand, 33611485 - 33611593
Alignment:
Q  70 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 168  Q
    |||||| |||||| ||| | ||| | |||||||||||||| |||||||||||||||||| ||||||||| |||||||   |||||||||| || ||||||    
T  33611485 aaaaaagggtgtttagggggtttccagattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccaaattacaaaatccgaaaaaat 33611584  T
Q  169 ccgtaactc 177  Q
    |||||||||    
T  33611585 ccgtaactc 33611593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 70 - 177
Target Start/End: Original strand, 40908009 - 40908117
Alignment:
Q  70 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 168  Q
    |||||| |||||| ||| | ||||||||||||||||||||||||||||||||| | ||| | ||||||| ||||||| ||||| ||||||||  ||||||    
T  40908009 aaaaaagggtgtttagggggttttcggattatgtaatccgaaaacatcatgtagcacgcccaattttttgaagtttccggattgcaaaattctaaaaaat 40908108  T
Q  169 ccgtaactc 177  Q
    |||| ||||    
T  40908109 ccgttactc 40908117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 32817687 - 32817794
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | |||||||||||||||||| | ||||||||||||| |||| ||||||||| ||||||| ||||||||||||  ||||||| |    
T  32817687 aaaaagggtgtttagggggttttcggattatgtaatctggaaacatcatgtaatgcgccctattttttgaagtttccggattacaaaatctggaaaaacc 32817786  T
Q  170 cgtaactc 177  Q
    ||| ||||    
T  32817787 cgttactc 32817794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 90 - 172
Target Start/End: Complemental strand, 42546031 - 42545948
Alignment:
Q  90 ttttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgt 172  Q
    ||||||||| |||| ||||| |||||||||||||||||  ||||||||| ||||||| |||||||||||| |||||||||||||    
T  42546031 ttttcggatcatgttatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaatccggaaaaatccgt 42545948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 45567952 - 45568059
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | ||||||||| ||||||||| |||| |||||||| ||||| ||||||||| ||||||| | ||||||||||||||||||| |    
T  45567952 aaaaagggtgtttagggggttttcggatcatgtaatccaaaaatatcatgtagcgcgccctattttttgaagtttccgaattacaaaattcggaaaaacc 45568051  T
Q  170 cgtaactc 177  Q
    ||| ||||    
T  45568052 cgttactc 45568059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 92 - 227
Target Start/End: Original strand, 6223834 - 6223972
Alignment:
Q  92 ttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt--aagtttctggattacaaaattcggaaaaatccgtaactc-nnnnnnnactc 188  Q
    ||||||||||||||||| |||| ||||||||| ||||||||||||||  ||||||  |||||  |||||||| |||||||||||||||        || |    
T  6223834 ttcggattatgtaatccaaaaaaatcatgtaatgcgctctatttttttgaagttttcggattgaaaaattcgaaaaaatccgtaactcattttttcaccc 6223933  T
Q  189 tataacaaaggaaaacatcatttcagattatgaaatccg 227  Q
    |||||||||||||||||  | ||| ||||||||||||||    
T  6223934 tataacaaaggaaaacacgagttcggattatgaaatccg 6223972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 71 - 227
Target Start/End: Original strand, 34162797 - 34162956
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcgg-aaaaat 168  Q
    ||||| |||||| ||| | ||| |||||||||||||||| ||||||||| |||| ||| ||||||||| ||||||| |||||||||||| ||| |||||     
T  34162797 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatctaacacgccctattttttgaagtttccggattacaaaatccggaaaaaac 34162896  T
Q  169 ccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 227  Q
    ||| |||| |       || |||||||||||||||||| |||| | ||||||||||||||    
T  34162897 ccgcaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatccg 34162956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 94 - 230
Target Start/End: Original strand, 41584769 - 41584907
Alignment:
Q  94 cggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaatccgtaac-tcnnnnnnnactctat 191  Q
    |||||||||||||||||||||||||||||||  || ||| ||||| || |||| |||||||||||| | |||||| ||||||| ||       || ||||    
T  41584769 cggattatgtaatccgaaaacatcatgtaacatgccctagtttttgaaatttccggattacaaaatccagaaaaacccgtaacttcatttttcaccctat 41584868  T
Q  192 aacaaaggaaaacatcatttcagattatgaaatccgaaa 230  Q
    |||||| ||||||| |||| | |||||||||||||||||    
T  41584869 aacaaaagaaaacaccattcctgattatgaaatccgaaa 41584907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 40650751 - 40650858
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    |||||||||||| | | | ||| |||||||||||||||  |||||||||||||| ||| ||||||||| ||||||| |||||||||| | || |||||||    
T  40650751 aaaaatggtgtttaaggggtttccggattatgtaatccagaaacatcatgtaacacgccctattttttgaagtttccggattacaaattccgaaaaaatc 40650850  T
Q  170 cgtaactc 177  Q
    ||| ||||    
T  40650851 cgttactc 40650858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 49677542 - 49677475
Alignment:
Q  95 ggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcg 161  Q
    ||||||||||||||| |||||||||||||||||| ||||||||| |||||||  ||||||||||||||    
T  49677542 ggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccagattacaaaattcg 49677475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 231
Target Start/End: Complemental strand, 17000461 - 17000300
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatt-ttttaagtttctggattacaaaattcggaaaaatc 169  Q
    |||||||||||| ||| | ||| |||||||||||||||  ||||||||| ||||| || ||||| ||| | ||||| | |||||||||| |||||||| |    
T  17000461 aaaaatggtgtttagggggtttccggattatgtaatccagaaacatcatctaacgtgccctattatttgatgtttccgaattacaaaatccggaaaaa-c 17000363  T
Q  170 cgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaa 231  Q
    ||||||| |       || |||||||||||||||||| ||||   ||||||||||||||||||    
T  17000362 cgtaactccatttttcaccctataacaaaggaaaacaccattctggattatgaaatccgaaaa 17000300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 247
Target Start/End: Complemental strand, 38950333 - 38950186
Alignment:
Q  90 ttttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaattcggaaaaatccgtaactcnnnnnnnactct 189  Q
    |||||||||||||||||| ||||| |||||||||||||| |||||||         |||||||||||||  |||||||||||||||||       ||| |    
T  38950333 ttttcggattatgtaatctgaaaaaatcatgtaacgcgccctatttt---------tggattacaaaatctggaaaaatccgtaactcatttttcact-t 38950244  T
Q  190 ataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
     ||||||||||||| | |||| |  ||||| ||||||| ||| |||||||||||||||    
T  38950243 ttaacaaaggaaaataccattccgaattataaaatccggaaacctcaaagacattttt 38950186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 105 - 247
Target Start/End: Complemental strand, 27794903 - 27794760
Alignment:
Q  105 atccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaattcggaaaaatccgtaactcnnnnnnn-actctataacaaaggaaaa 203  Q
    ||||||||| ||||||||| |||| |||||||| |  |||  ||||||||||||  | |||||||| ||||||        || ||||||||||||||||    
T  27794903 atccgaaaaaatcatgtaaagcgccctatttttgagattttcggattacaaaatctgaaaaaatccataactcattttttcaccctataacaaaggaaaa 27794804  T
Q  204 catcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
    || || ||| ||||||||||||||||||| |||| | |||||||    
T  27794803 caccagttcggattatgaaatccgaaaatttcaagggcattttt 27794760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 28866732 - 28866806
Alignment:
Q  96 gattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaattcggaaaaatcc 170  Q
    |||||||||||||| ||| |||||||| ||||| ||||||||||   ||| |||||||||||| |||||||||||    
T  28866732 gattatgtaatccggaaaaatcatgtagcgcgccctattttttatagttccggattacaaaatccggaaaaatcc 28866806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 15069941 - 15070025
Alignment:
Q  94 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 177  Q
    |||||||| ||||||| |||||||||||||| ||  ||||||||| ||||||| |||||||||||| || ||| |||||| ||||    
T  15069941 cggattatataatccggaaacatcatgtaacacgtcctattttttgaagtttccggattacaaaatccgaaaatatccgttactc 15070025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 32542455 - 32542391
Alignment:
Q  95 ggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaat 158  Q
    ||||||||||||||| |||||||||||||||| | ||||||||| ||| ||| ||||||||||||    
T  32542455 ggattatgtaatccgtaaacatcatgtaacgcaccctattttttgaagattccggattacaaaat 32542391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 24471499 - 24471558
Alignment:
Q  188 ctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
    |||||||||||||||||| |||| | |||||||||||||| ||| ||||| |||||||||    
T  24471499 ctataacaaaggaaaacaccattccggattatgaaatccggaaacctcaaggacattttt 24471558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 43319008 - 43319047
Alignment:
Q  24 ttggtgctggtgttgtccggattacgtaatccggattgca 63  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  43319008 ttggtgctggtgttgtccagattacgtaatccggattgca 43319047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 45046933 - 45047033
Alignment:
Q  77 ggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaac 175  Q
    |||||| ||| | ||| ||||||||||||| || ||||||||||||| | || || |||||| ||||||  |||||||||||| ||||||||||||| ||    
T  45046933 ggtgtttagggggtttccggattatgtaattcggaaacatcatgtaatg-gccctcttttttgaagttttcggattacaaaatccggaaaaatccgttac 45047031  T
Q  176 tc 177  Q
    ||    
T  45047032 tc 45047033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 52744931 - 52745000
Alignment:
Q  109 gaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 177  Q
    ||||| |||||||| ||||| ||||||||| ||||||   ||||||||||||||||||||||||| ||||    
T  52744931 gaaaatatcatgtagcgcgccctattttttgaagttttcagattacaaaattcggaaaaatccgttactc 52745000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 9445909 - 9445945
Alignment:
Q  19 tagatttggtgctggtgttgtccggattacgtaatcc 55  Q
    |||| ||||||||||||||||||||||||||||||||    
T  9445909 tagaattggtgctggtgttgtccggattacgtaatcc 9445945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 167
Target Start/End: Complemental strand, 7011293 - 7011195
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt--aagtttctggattacaaaattcggaaaaa 167  Q
    ||||||| |||| ||| | |||||||||||  | || || |||||||||||||||||| || ||||||  ||||||| |||||||||||| | ||||||    
T  7011293 aaaaatgatgtttagggggttttcggattacatgattcggaaacatcatgtaacgcgccctttttttttgaagtttccggattacaaaatccagaaaaa 7011195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 305
Target Start/End: Original strand, 30829739 - 30829769
Alignment:
Q  275 aagcttatagggtgggaaaagtaatactccc 305  Q
    |||||||||||||||||||||||||||||||    
T  30829739 aagcttatagggtgggaaaagtaatactccc 30829769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 800620 - 800652
Alignment:
Q  24 ttggtgctggtgttgtccggattacgtaatccg 56  Q
    |||||| ||||||||||||||||||||||||||    
T  800620 ttggtgttggtgttgtccggattacgtaatccg 800652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 70 - 237
Target Start/End: Complemental strand, 32035197 - 32035028
Alignment:
Q  70 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 168  Q
    |||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| |||||||||    
T  32035197 aaaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaat 32035098  T
Q  169 ccgtaactcnnnnnnnactc-tataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaa 237  Q
    |||||||||         || ||||||||| |||||||||||| |||||||||||||||||||| |||||    
T  32035097 ccgtaactccatttttcatcatataacaaaagaaaacatcattccagattatgaaatccgaaaacctcaa 32035028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 71 - 247
Target Start/End: Complemental strand, 5699641 - 5699464
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||||| ||||| |    
T  5699641 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttcaagtttccggattacaaaattcgaaaaaacc 5699542  T
Q  170 cgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
    ||||||| |       || |||||||||||||||||| |||| | |||||||||||||| ||| |||||||||||||||    
T  5699541 cgtaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatccggaaa-ctcaaagacattttt 5699464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 96 - 247
Target Start/End: Original strand, 33413448 - 33413600
Alignment:
Q  96 gattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctataac 194  Q
    |||||||||||| | |||||||||||||||||| |||||||| ||||||| |||||||||||||| ||||||| ||||||| |       || |||||||    
T  33413448 gattatgtaatctggaaacatcatgtaacgcgccctatttttgaagtttccggattacaaaattcagaaaaattcgtaactccatttttcaccctataac 33413547  T
Q  195 aaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
    ||||||||||| |||| | |||||||||||||| |||  |||||| |||||||    
T  33413548 aaaggaaaacaccattccggattatgaaatccggaaacatcaaaggcattttt 33413600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 71 - 177
Target Start/End: Complemental strand, 17264493 - 17264386
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| |||||||  ||||||||||| ||||||||||    
T  17264493 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccagattacaaaatccggaaaaatc 17264394  T
Q  170 cgtaactc 177  Q
    ||| ||||    
T  17264393 cgttactc 17264386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 71 - 247
Target Start/End: Original strand, 24604438 - 24604617
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    |||||||||||| | | | | |||||||||||||||||||| | |||||||||  ||| ||||||||| |||||| ||||||||||||||||||||||||    
T  24604438 aaaaatggtgtttaaggggtgttcggattatgtaatccgaagaaatcatgtaagacgccctattttttgaagtttttggattacaaaattcggaaaaatc 24604537  T
Q  170 cgtaactc--nnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
    | ||||||         || |||| ||||||||||||| || ||| || |||||||||||||||  |||| |||||||||    
T  24604538 cttaactcatttttttcaccctatgacaaaggaaaacaccagttcggaatatgaaatccgaaaacttcaaggacattttt 24604617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 90 - 177
Target Start/End: Complemental strand, 7412892 - 7412804
Alignment:
Q  90 ttttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 177  Q
    |||||||||||||||||||| |||||||||||||| ||| ||||||||| ||||||| |||||||||||| |||||||| |||| ||||    
T  7412892 ttttcggattatgtaatccggaaacatcatgtaacacgccctattttttgaagtttccggattacaaaatccggaaaaacccgttactc 7412804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 227
Target Start/End: Complemental strand, 23406879 - 23406721
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    |||||||||||| ||| | ||| |||||||||||||||  ||||||||  |||||||| ||||||||| ||||||| ||||||| |||||||||||||      
T  23406879 aaaaatggtgtttagggggtttccggattatgtaatccagaaacatcaactaacgcgccctattttttgaagtttccggattacgaaattcggaaaaact 23406780  T
Q  170 cgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 227  Q
    ||||||| |       || |||||||||||||||||| |||| | ||||| ||||||||    
T  23406779 cgtaactccatttttcaccctataacaaaggaaaacaccattccggattacgaaatccg 23406721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 71 - 170
Target Start/End: Original strand, 14587636 - 14587736
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    |||||||||||| ||| | |||  ||||||||||||| | |||||||||||||||||| ||||||||| ||||||  |||||||||||| ||||||||||    
T  14587636 aaaaatggtgtttagggggtttatggattatgtaatcaggaaacatcatgtaacgcgccctattttttaaagttttcggattacaaaatccggaaaaatc 14587735  T
Q  170 c 170  Q
    |    
T  14587736 c 14587736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 3717359 - 3717455
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctct-attttttaagtttctggattacaaaattcggaaaa 166  Q
    |||||| ||||| ||| | ||| | |||||| ||||||| |||||||||||||||||| || |||||| ||||||| ||||||||||||||||||||    
T  3717359 aaaaattgtgtttaggaggtttccagattatataatccggaaacatcatgtaacgcgccctaatttttgaagtttccggattacaaaattcggaaaa 3717455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 79 - 177
Target Start/End: Original strand, 4508386 - 4508485
Alignment:
Q  79 tgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctct-attttttaagtttctggattacaaaattcggaaaaatccgtaactc 177  Q
    |||| ||| ||||| |||||||| ||||||| |||||||||||||| ||| || |||||| || ||||||||||| ||||| ||||||||||||| ||||    
T  4508386 tgtttaggggatttccggattatataatccggaaacatcatgtaacacgccctaatttttgaaatttctggattataaaatccggaaaaatccgttactc 4508485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 2813300 - 2813409
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaa--attcggaaaaa 167  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||| | |  |||||||| ||||||| ||||||||||  || ||||||||    
T  2813300 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacacaccttattttttgaagtttccggattacaaaatatccggaaaaa 2813399  T
Q  168 tccgtaactc 177  Q
    || |||||||    
T  2813400 tctgtaactc 2813409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 171
Target Start/End: Complemental strand, 9905180 - 9905100
Alignment:
Q  92 ttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccg 171  Q
    |||||||||||||||||| ||| |||| ||| ||||| ||||||||| || |||| | |||||||||| ||||||||||||    
T  9905180 ttcggattatgtaatccggaaaaatcacgtagcgcgccctattttttgaaatttccgaattacaaaatccggaaaaatccg 9905100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 17501001 - 17500967
Alignment:
Q  20 agatttggtgctggtgttgtccggattacgtaatc 54  Q
    |||||||||||||||||||||||||||||||||||    
T  17501001 agatttggtgctggtgttgtccggattacgtaatc 17500967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 5638919 - 5638879
Alignment:
Q  97 attatgtaatccgaaaacatcatgtaacgcgctctattttt 137  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  5638919 attatgtaatccggaaacatcatgtaacgcgccctattttt 5638879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 1945630 - 1945712
Alignment:
Q  96 gattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 177  Q
    |||||| ||||||| |||  | ||||||||| | ||| ||||| ||||||  |||||||||||| ||||||||||||||||||    
T  1945630 gattatataatccggaaaatttatgtaacgcaccctagtttttgaagttttcggattacaaaatccggaaaaatccgtaactc 1945712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 90 - 247
Target Start/End: Original strand, 3304853 - 3305013
Alignment:
Q  90 ttttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt--aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnac 186  Q
    |||| ||||||||||||||| ||| |||||||||| | | |||||||||  |||||||||||||||||||| ||||||||||||||||| |       ||    
T  3304853 tttttggattatgtaatccggaaatatcatgtaacacaccctatttttttgaagtttctggattacaaaatccggaaaaatccgtaactccatttttcac 3304952  T
Q  187 tctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
     |||||||||||||||||| |||| || ||||||||||||| |||||||||||||||||||    
T  3304953 cctataacaaaggaaaacaccattccaaattatgaaatccggaaatctcaaagacattttt 3305013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 70 - 176
Target Start/End: Complemental strand, 8154983 - 8154876
Alignment:
Q  70 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 168  Q
    |||||| |||||| ||| | |||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| |||||||||    
T  8154983 aaaaaagggtgtttagggggttttcggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaat 8154884  T
Q  169 ccgtaact 176  Q
    ||||||||    
T  8154883 ccgtaact 8154876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 71 - 177
Target Start/End: Complemental strand, 43737207 - 43737100
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | ||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||| ||||||||||    
T  43737207 aaaaagggtgtttagggggtttccggattatgtaatccgaaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaatc 43737108  T
Q  170 cgtaactc 177  Q
    ||| ||||    
T  43737107 cgttactc 43737100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 70 - 247
Target Start/End: Complemental strand, 47202578 - 47202399
Alignment:
Q  70 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 168  Q
    |||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||  ||||||||||||  ||||||||    
T  47202578 aaaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatctggaaaaat 47202479  T
Q  169 ccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
    |||||||| |       || |||||||||| ||||||| |||| | |||||||||||||| ||| ||||| | |||||||    
T  47202478 ccgtaactccatttttcaccctataacaaaagaaaacaccattccggattatgaaatccggaaacctcaagggcattttt 47202399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 71 - 227
Target Start/End: Original strand, 42925717 - 42925875
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | ||| |||||||||||||||||||||||||||||| |||| ||||||||| ||||||| ||||||||||||  ||||||| |    
T  42925717 aaaaaaggtgtttagggggtttccggattatgtaatccgaaaacatcatgtaatgcgccctattttttgaagtttccggattacaaaatcaggaaaaacc 42925816  T
Q  170 cgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 227  Q
    ||||||| |       || |||||||||||||||||| |||| | ||||||||||||||    
T  42925817 cgtaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatccg 42925875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 24042264 - 24042371
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    |||||||||||| ||| | ||| |||||||||||||||| ||||||||||||||||||  |||||||| ||||||| |||||||||||| |||||||| |    
T  24042264 aaaaatggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccttattttttgaagtttccggattacaaaatccggaaaaacc 24042363  T
Q  170 cgtaactc 177  Q
    ||||||||    
T  24042364 cgtaactc 24042371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 19225674 - 19225771
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaa 167  Q
    |||||||||||| ||| ||||| |||||||||||||||| |||||||||||||||| | ||||||||| |||||| ||||||||||||| ||||||||    
T  19225674 aaaaatggtgtttaggggatttccggattatgtaatccggaaacatcatgtaacgcaccctattttttgaagtttttggattacaaaatccggaaaaa 19225771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 71 - 231
Target Start/End: Original strand, 28230544 - 28230705
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||| ||||||||| ||||||||| ||||||| |||||||||||| ||||||||||    
T  28230544 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcaagtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaatc 28230643  T
Q  170 cgtaactcnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaa 231  Q
    ||| ||||       || || ||||||| ||||||| ||||   |||||| |||||||||||    
T  28230644 cgttactcattttttaccctttaacaaaagaaaacaccattctggattataaaatccgaaaa 28230705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 71 - 177
Target Start/End: Complemental strand, 3936191 - 3936084
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | |||| ||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| |||||||| |    
T  3936191 aaaaagggtgtttagggggtttttggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacc 3936092  T
Q  170 cgtaactc 177  Q
    ||| ||||    
T  3936091 cgttactc 3936084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 71 - 172
Target Start/End: Original strand, 37518371 - 37518473
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    |||||||||||| ||| | ||| |||||||||||||||| |||| ||||||||| ||| ||||||||| |||||||||||||| ||||| ||||||||||    
T  37518371 aaaaatggtgtttagggggtttccggattatgtaatccggaaacttcatgtaacacgccctattttttgaagtttctggattataaaatccggaaaaatc 37518470  T
Q  170 cgt 172  Q
    |||    
T  37518471 cgt 37518473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 36408431 - 36408347
Alignment:
Q  94 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 177  Q
    |||||||||||||||| |||||||||||| |||||  |||||||| |||||||||||||||||||| ||||||||||||| ||||    
T  36408431 cggattatgtaatccggaaacatcatgtatcgcgccttattttttgaagtttctggattacaaaatccggaaaaatccgttactc 36408347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 133 - 249
Target Start/End: Complemental strand, 28346167 - 28346051
Alignment:
Q  133 ttttttaagtttctggattacaaaattcggaaaaatccgtaactcnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaat 232  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||        |||| |||||||||||||||||||| ||||||||||||| |  |||     
T  28346167 tttttgaagtttctggattacaaaattcggaaacatccgtaactcatttttttctctttaacaaaggaaaacatcattccagattatgaaattcagaaac 28346068  T
Q  233 ctcaaagacatttttag 249  Q
     |||||| |||||||||    
T  28346067 ttcaaaggcatttttag 28346051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 33574129 - 33574216
Alignment:
Q  90 ttttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaact 176  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| |||||||||||| |  |||||||| |||||    
T  33574129 ttttcggattatgtaatccgaaaacatcatgtaacgcaccctattttttaaagtttccggattacaaaatccaaaaaaatccataact 33574216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 70 - 177
Target Start/End: Complemental strand, 36629289 - 36629181
Alignment:
Q  70 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaat 168  Q
    ||||||||||||| ||  | ||| | |||||||||||||| |||||||||||||||||| ||| ||||||||||| |  ||||||||||| |||||||||    
T  36629289 aaaaaatggtgtttagagggtttccagattatgtaatccggaaacatcatgtaacgcgccctatttttttaagttaccagattacaaaatccggaaaaat 36629190  T
Q  169 ccgtaactc 177  Q
    |||| ||||    
T  36629189 ccgttactc 36629181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 94 - 237
Target Start/End: Complemental strand, 31643101 - 31642956
Alignment:
Q  94 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctat 191  Q
    |||||||||||||||| |||||||||||||| | | ||||||||| |||||||   ||||||| || | ||||||||||||||| |       || ||||    
T  31643101 cggattatgtaatccggaaacatcatgtaacacaccctattttttgaagtttccaaattacaagatccagaaaaatccgtaactccatttttcaccctat 31643002  T
Q  192 aacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaa 237  Q
    |||||| ||||||| |||| |||||||||||||||| ||| |||||    
T  31643001 aacaaacgaaaacaccattccagattatgaaatccggaaacctcaa 31642956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 71 - 177
Target Start/End: Complemental strand, 6467780 - 6467671
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaag-tttctgga--ttacaaaattcggaaaaa 167  Q
    ||||| |||||| ||| | | |||||||||||||||||||| | |||||||||| | | ||||||||| || ||||||||  ||||| ||||||||||||    
T  6467780 aaaaagggtgtttagggggtgttcggattatgtaatccgaacaaatcatgtaacacaccctattttttgagatttctggattttacataattcggaaaaa 6467681  T
Q  168 tccgtaactc 177  Q
    ||||||||||    
T  6467680 tccgtaactc 6467671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 36468613 - 36468719
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | ||| |||||||||||||| |||| ||||||||||| ||| ||||||||| |||||||   |||||||||| ||||||||||    
T  36468613 aaaaagggtgtttagggggtttccggattatgtaatctgaaa-catcatgtaacacgccctattttttgaagtttccatattacaaaatccggaaaaatc 36468711  T
Q  170 cgtaactc 177  Q
    ||| ||||    
T  36468712 cgttactc 36468719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 33151292 - 33151201
Alignment:
Q  70 aaaaaatg-gtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta--ttttttaagtttctggattacaaaat 158  Q
    |||||||| ||||| ||| ||||| |||||||||||||||||| ||||||| ||| |||| |||  ||||||||||||| | ||||||||||    
T  33151292 aaaaaatgagtgtttaggggatttccggattatgtaatccgaagacatcatataatgcgccctattttttttaagtttccgaattacaaaat 33151201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 8214703 - 8214762
Alignment:
Q  188 ctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
    |||||| ||||||||||| |  |||||||| | |||||||||||||||||||||||||||    
T  8214703 ctataataaaggaaaacaccggttcagattttaaaatccgaaaatctcaaagacattttt 8214762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 31985594 - 31985661
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt 138  Q
    |||||||||||| | | | | |||| ||||||||||||||||| |||||||||||||| |||||||||    
T  31985594 aaaaatggtgtttaaggggtgttcgaattatgtaatccgaaaaaatcatgtaacgcgccctatttttt 31985661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 26555138 - 26555184
Alignment:
Q  92 ttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt 138  Q
    ||||||||| ||||||| |||| |||||||||||||| |||||||||    
T  26555138 ttcggattaggtaatccaaaaaaatcatgtaacgcgccctatttttt 26555184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 42877149 - 42877218
Alignment:
Q  99 tatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaa 167  Q
    ||||||||||| |||||| ||||||||||| ||| |||||| | ||||  ||||||||||| ||||||||    
T  42877149 tatgtaatccggaaacattatgtaacgcgccctattttttttattttcccgattacaaaatccggaaaaa 42877218  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 70 - 248
Target Start/End: Complemental strand, 47302103 - 47301923
Alignment:
Q  70 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaat 168  Q
    |||||| |||||| ||| | |||||||||||||||||||| ||||||||||||||||||  || ||||||||||||| |||||||||||| |||||||||    
T  47302103 aaaaaagggtgtttaggaggttttcggattatgtaatccggaaacatcatgtaacgcgccttatttttttaagtttccggattacaaaatccggaaaaat 47302004  T
Q  169 ccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttta 248  Q
    || ||||| |       || |||||||||||||||||| |||| |  |||||||||||||||||  |||| ||||||||||    
T  47302003 ccataactccatttttcaccctataacaaaggaaaacaccattccgaattatgaaatccgaaaacttcaaggacattttta 47301923  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 71 - 165
Target Start/End: Original strand, 34821419 - 34821514
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaa 165  Q
    |||||||||||| ||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  34821419 aaaaatggtgtttagggggtttccggattatgtaatccgaaaacatcatgtaacgcgctctattttttgaagtttccggattacaaaattcggaaa 34821514  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 24 - 247
Target Start/End: Complemental strand, 48304127 - 48303896
Alignment:
Q  24 ttggtgctggtgttgtccggattacgtaatccggattgca------ccatagaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatc 117  Q
    |||||| ||||| |||| ||||||||||||||||||||||      ||||  ||||||||||||| ||| | |||||||||||||||||| ||||| |||    
T  48304127 ttggtgatggtgctgtctggattacgtaatccggattgcatcaccaccatgaaaaaaatggtgttgagggggttttcggattatgtaatctgaaaaaatc 48304028  T
Q  118 atgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactc-nnnnnnnactctataacaaaggaaaacatcatttcaga 215  Q
    ||||||| | | ||||||||| || |||| |||||||||||| ||||||||||||||||||        || || ||||||||||||||| |||| | ||    
T  48304027 atgtaacacaccctattttttgagatttccggattacaaaatccggaaaaatccgtaactcattttttcaccctttaacaaaggaaaacaccattccgga 48303928  T
Q  216 ttatgaaatccgaaaatctcaaagacattttt 247  Q
    |||||||||| | ||| ||||| | |||||||    
T  48303927 ttatgaaatctggaaacctcaagggcattttt 48303896  T

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Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 71 - 247
Target Start/End: Complemental strand, 51258485 - 51258308
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    |||||||||||| ||| | | |||||||||||||||||||||| || ||||||||||| ||||||||| || ||| ||||||||||||| ||||||||||    
T  51258485 aaaaatggtgtttagggggtgttcggattatgtaatccgaaaaaattatgtaacgcgccctattttttgaaatttatggattacaaaatccggaaaaatc 51258386  T
Q  170 cgtaactcnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
    ||||||||       || || |||||||||||||||  ||| | |||||||||||||  |||  |||| |||||||||    
T  51258385 cgtaactcatttttcaccctttaacaaaggaaaacacaattccggattatgaaatccagaaacttcaaggacattttt 51258308  T

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Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 71 - 227
Target Start/End: Original strand, 3902882 - 3903040
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | ||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||  |||||||||||| |||||||| |    
T  3902882 aaaaagggtgtttagggggtttccggattatgtaatccaaaaacatcatgtaacgcgctctattttttgaagttttcggattacaaaatccggaaaaacc 3902981  T
Q  170 cgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 227  Q
     |||||| |       || |||||||||||||||||| |||| | ||||||||||||||    
T  3902982 agtaactccacttttcaccctataacaaaggaaaacaccattccggattatgaaatccg 3903040  T

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Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 71 - 172
Target Start/End: Complemental strand, 39149892 - 39149791
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaattcggaaaaatcc 170  Q
    |||||||||||| ||| | ||| |||||||||||||||| |||||  ||||||||||| ||||||||| ||||||||||||||||||| |||||||||||    
T  39149892 aaaaatggtgtttagggggtttccggattatgtaatccggaaacactatgtaacgcgccctattttttgagtttctggattacaaaatccggaaaaatcc 39149793  T
Q  171 gt 172  Q
    ||    
T  39149792 gt 39149791  T

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Target: chr3; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 70 - 172
Target Start/End: Complemental strand, 35142158 - 35142055
Alignment:
Q  70 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctct-attttttaagtttctggattacaaaattcggaaaaat 168  Q
    ||||||||||||| ||| | ||| |||||||||||||||| |||||||||||||||||| || |||||| ||||||| |||||||||||  |||||||||    
T  35142158 aaaaaatggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctaatttttgaagtttccggattacaaaacccggaaaaat 35142059  T
Q  169 ccgt 172  Q
    ||||    
T  35142058 ccgt 35142055  T

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Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 90 - 177
Target Start/End: Complemental strand, 3937452 - 3937364
Alignment:
Q  90 ttttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 177  Q
    |||||| ||||||||||||  |||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||  ||||||||    
T  3937452 ttttcgaattatgtaatccagaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaattcggaaaaactcgtaactc 3937364  T

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Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 47740008 - 47740107
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||  |||||||||    
T  47740008 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatctggaaaaatc 47740107  T

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Target: chr3; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 71 - 172
Target Start/End: Original strand, 38977824 - 38977926
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | ||||||||||||||||||| |||||| |||||||||||| ||||||||| ||||||| ||||||||||||   ||||||||    
T  38977824 aaaaaaggtgtttagggggttttcggattatgtaatcccaaaacaccatgtaacgcgccctattttttgaagtttccggattacaaaatctagaaaaatc 38977923  T
Q  170 cgt 172  Q
    |||    
T  38977924 cgt 38977926  T

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Target: chr3; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 94 - 227
Target Start/End: Original strand, 2358721 - 2358857
Alignment:
Q  94 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt--aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactcta 190  Q
    |||||||||||| ||| |||||||||||||| ||| |||||||||  ||||||| |||||||||||| | | ||||||||||||| |       || |||    
T  2358721 cggattatgtaagccggaaacatcatgtaacacgccctatttttttgaagtttccggattacaaaatccaggaaaatccgtaactccatttttcacccta 2358820  T
Q  191 taacaaaggaaaacatcatttcagattatgaaatccg 227  Q
    ||||||||||||||| |||| | ||||||||||||||    
T  2358821 taacaaaggaaaacaccattccggattatgaaatccg 2358857  T

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Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 501240 - 501314
Alignment:
Q  94 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaa 167  Q
    ||||||||| |||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||| ||||||||    
T  501240 cggattatgcaatccggaaacatcatgtaacgcgccctattttttgaagtttttggattacaaaatccggaaaaa 501314  T

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Target: chr3; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 70 - 246
Target Start/End: Complemental strand, 28873087 - 28872910
Alignment:
Q  70 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 168  Q
    |||||| |||||| ||| | || | ||||||||||||||| |||||| ||||||||||  ||||||||| || |||  |||||| ||||| | ||||||     
T  28873087 aaaaaagggtgtttagggggttgttggattatgtaatccggaaacataatgtaacgcgtcctattttttgaaattttcggattataaaatccagaaaaac 28872988  T
Q  169 ccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacatttt 246  Q
     ||||||| |       || ||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||    
T  28872987 tcgtaacttcatttttcaccctataacaaagaaaaacatcattccagattatgaaatccgaaaa-ctcaaggacatttt 28872910  T

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Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 97 - 172
Target Start/End: Complemental strand, 33438578 - 33438503
Alignment:
Q  97 attatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgt 172  Q
    ||||||||||||| || ||||||||||||||| ||||||||| |||||| ||||||||||||||| |||||||||||    
T  33438578 attatgtaatccggaa-catcatgtaacgcgccctattttttgaagtttttggattacaaaattcagaaaaatccgt 33438503  T

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Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 177
Target Start/End: Complemental strand, 45244453 - 45244365
Alignment:
Q  90 ttttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactc 177  Q
    ||||| |||||||||||||||||| |||||||||||||| ||||||||| || |||  | |||||||||| ||||||||||| ||||||    
T  45244453 ttttcagattatgtaatccgaaaaaatcatgtaacgcgccctattttttgagattttcgaattacaaaatccggaaaaatccataactc 45244365  T

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Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 95 - 247
Target Start/End: Original strand, 49096327 - 49096480
Alignment:
Q  95 ggattatgtaatccgaaaacatcatgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactcnnnnnnnactctataa 193  Q
    |||||||||||| |||||| ||||||||||  ||  |||||||| || |||| |||||||||||| |||||||||||||||||        || || |||    
T  49096327 ggattatgtaattcgaaaaaatcatgtaacatgccatattttttgagatttccggattacaaaatccggaaaaatccgtaacttatttttcaccctttaa 49096426  T
Q  194 caaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
     |||| ||||||||||| ||||||||||||| || |||  |||| |||||||||    
T  49096427 taaagaaaaacatcattccagattatgaaattcggaaacttcaaggacattttt 49096480  T

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Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 51540713 - 51540797
Alignment:
Q  94 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 177  Q
    ||||||||||||| || |||||||||||||||||| ||||||||| ||||||| ||||| |||||| | ||||||||||| ||||    
T  51540713 cggattatgtaattcggaaacatcatgtaacgcgccctattttttgaagtttccggattccaaaatccagaaaaatccgttactc 51540797  T

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Target: chr3; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 71 - 177
Target Start/End: Complemental strand, 50716335 - 50716228
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | ||| |||||||||||||| | |||||||||||||| ||| ||||||||| ||||||  |||||||||||| || ||||| |    
T  50716335 aaaaagggtgtttagggggtttccggattatgtaatctggaaacatcatgtaacacgccctattttttgaagttttcggattacaaaatccgaaaaaacc 50716236  T
Q  170 cgtaactc 177  Q
    ||||||||    
T  50716235 cgtaactc 50716228  T

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Target: chr3; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 50796512 - 50796619
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | ||| |||||||||||||| | |||||||||||||| ||| ||||||||| ||||||  |||||||||||| || ||||| |    
T  50796512 aaaaagggtgtttagggggtttccggattatgtaatctggaaacatcatgtaacacgccctattttttgaagttttcggattacaaaatccgaaaaaacc 50796611  T
Q  170 cgtaactc 177  Q
    ||||||||    
T  50796612 cgtaactc 50796619  T

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Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 3352168 - 3352249
Alignment:
Q  97 attatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaatccgtaactc 177  Q
    ||||||||||||| |||||||||||||||| | ||| |||||||||||||  |||||||||||| |||||||| ||| ||||    
T  3352168 attatgtaatccggaaacatcatgtaacgcaccctatttttttaagtttcctgattacaaaatttggaaaaattcgttactc 3352249  T

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Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 231
Target Start/End: Original strand, 30721881 - 30722048
Alignment:
Q  71 aaaaatggtgttcaggcgatt-ttcggattatgtaatccgaaaacatcatgtaac---gcgctctatttttt-aagtttctggattacaaaattcggaaa 165  Q
    |||||||||||| ||| || | |||||||||||||||||||||| |||||||||    |||| ||||||||| ||||||  ||||||||||||    |||    
T  30721881 aaaaatggtgtttaggggagtgttcggattatgtaatccgaaaaaatcatgtaatattgcgccctattttttgaagttttcggattacaaaatctaaaaa 30721980  T
Q  166 aatccgtaactcnnnnnnn--actctataacaaaggaaaacatcatttcagattatgaaatccgaaaa 231  Q
     |||| ||||||         ||||||||||||||||||||| || ||||||||||||||||||||||    
T  30721981 catccataactcatttttttcactctataacaaaggaaaacaccagttcagattatgaaatccgaaaa 30722048  T

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Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 52777287 - 52777226
Alignment:
Q  97 attatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaat 158  Q
    ||||||||||||| ||||||||||||| | ||||||||||| ||||||| ||||||||||||    
T  52777287 attatgtaatccggaaacatcatgtaaagtgctctatttttgaagtttccggattacaaaat 52777226  T

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Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 52777205 - 52777146
Alignment:
Q  188 ctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
    |||||||||||||||||| |||| |||||||||||||||||||| ||||| | |||||||    
T  52777205 ctataacaaaggaaaacaccattccagattatgaaatccgaaaacctcaagggcattttt 52777146  T

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Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 46622860 - 46622968
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctgg-attacaaaattcggaaaaat 168  Q
    |||||||||||| ||| | ||| | |||||||||||||| ||||||||||||||| |  ||||||||| ||||||| ||  ||| ||||| |||||||||    
T  46622860 aaaaatggtgtttagggggtttccagattatgtaatccggaaacatcatgtaacgtgtcctattttttgaagtttccggttttataaaatccggaaaaat 46622959  T
Q  169 ccgtaactc 177  Q
    |||| ||||    
T  46622960 ccgttactc 46622968  T

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Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 34821512 - 34821579
Alignment:
Q  111 aaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 177  Q
    |||||||| ||||||||| ||||||||| ||||||| |||||||||||| ||||||| ||||| ||||    
T  34821512 aaacatcaggtaacgcgccctattttttgaagtttccggattacaaaatccggaaaattccgttactc 34821579  T

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Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 32024936 - 32024878
Alignment:
Q  188 ctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacatttt 246  Q
    |||||| |||||||||||||| |||  ||| | ||||||||||||||||||||||||||    
T  32024936 ctataataaaggaaaacatcagttcgaattttaaaatccgaaaatctcaaagacatttt 32024878  T

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Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 43473044 - 43473097
Alignment:
Q  70 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaa 123  Q
    ||||||||||||| ||| | ||| |||||||||||||||| |||||||||||||    
T  43473044 aaaaaatggtgtttagggggtttccggattatgtaatccggaaacatcatgtaa 43473097  T

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Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 44085439 - 44085605
Alignment:
Q  19 tagatttggtgctggtgttgtccggattacgtaatccggatt------gcaccat-agaaaaaatggtgttcaggcgattttcggattatgtaatccgaa 111  Q
    |||| |||||||| |||||||| ||||||||||||| |||||      ||||||| | ||||||||||||| ||| | | |||||||||||||||| |||    
T  44085439 tagaattggtgcttgtgttgtctggattacgtaatctggattgcatcagcaccatgaaaaaaaatggtgtttagg-gctgttcggattatgtaatctgaa 44085537  T
Q  112 aacatcatgtaacgcgctctatttttt--aagtttctggattacaaaattcggaaaaatccgtaactc 177  Q
     | || ||||||| | | |||||||||  |  ||| | ||||||| ||||||||||||||||| ||||    
T  44085538 gaaattatgtaacacaccctatttttttgagatttttagattacataattcggaaaaatccgtcactc 44085605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 45244730 - 45244691
Alignment:
Q  24 ttggtgctggtgttgtccggattacgtaatccggattgca 63  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  45244730 ttggtgatggtattgtccggattacgtaatccggattgca 45244691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 32025119 - 32024999
Alignment:
Q  24 ttggtgctggtgttgtccggattacgtaatccggattgc------accatagaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatc 117  Q
    ||||||||||||||||||| ||||||||||||| | |||      |||||  ||||||||||||| ||| | | ||| |||| | ||||||||||| |||    
T  32025119 ttggtgctggtgttgtccgaattacgtaatccgaactgcatcaggaccatgaaaaaaatggtgtttagggggtgttcagattctataatccgaaaaaatc 32025020  T
Q  118 atgtaacgcgctctatttttt 138  Q
    || ||  |||| |||||||||    
T  32025019 atatagtgcgccctatttttt 32024999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 47123135 - 47123082
Alignment:
Q  125 gcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 177  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||| |||| ||||    
T  47123135 gcgccctattttttgaagtttccggattacaaaattcggaaaaacccgttactc 47123082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 47130501 - 47130448
Alignment:
Q  125 gcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 177  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||| |||| ||||    
T  47130501 gcgccctattttttgaagtttccggattacaaaattcggaaaaacccgttactc 47130448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 70 - 177
Target Start/End: Original strand, 31519967 - 31520075
Alignment:
Q  70 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 168  Q
    |||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||     
T  31519967 aaaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgctctattttttgaagtttctggattacaaaatccggaaaaag 31520066  T
Q  169 ccgtaactc 177  Q
    |||||||||    
T  31520067 ccgtaactc 31520075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 70 - 247
Target Start/End: Complemental strand, 21004473 - 21004295
Alignment:
Q  70 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaa-gtttctggattacaaaattcggaaaaat 168  Q
    ||||||||||||| |||   |||||||||||||||||||| |||||| |||||||||||  |||||||||| ||||| |||||||||||| |||||||||    
T  21004473 aaaaaatggtgtttagggagttttcggattatgtaatccggaaacat-atgtaacgcgccttattttttaaagtttccggattacaaaatccggaaaaat 21004375  T
Q  169 ccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
    |||||||| |       || |||||||||||||||||| |||| | |||||||||||| | ||| ||||| | |||||||    
T  21004374 ccgtaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatctggaaacctcaagggcattttt 21004295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 71 - 177
Target Start/End: Complemental strand, 3094764 - 3094657
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    |||||||||||| ||| | ||| |||||||||||||||| ||||||||||||| |||| ||||||||| ||||||| |||||||||||| |||||||| |    
T  3094764 aaaaatggtgtttagggggtttccggattatgtaatccggaaacatcatgtaatgcgccctattttttgaagtttccggattacaaaatccggaaaaacc 3094665  T
Q  170 cgtaactc 177  Q
    ||||||||    
T  3094664 cgtaactc 3094657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 27928017 - 27928124
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    |||||||||||| ||| | ||| | |||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| ||||||||||    
T  27928017 aaaaatggtgtttagggggtttcctgattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaatc 27928116  T
Q  170 cgtaactc 177  Q
    ||| ||||    
T  27928117 cgttactc 27928124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 226
Target Start/End: Complemental strand, 41530806 - 41530595
Alignment:
Q  24 ttggtgctggtgttgtccggattacgtaatccggattgca------ccatagaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaaca-t 116  Q
    |||||| ||||| |||||||||||||||||||||||||||      ||||  |||||| ||| || ||| | | ||| |||||||||||| ||||| | |    
T  41530806 ttggtgatggtgatgtccggattacgtaatccggattgcaacagcaccatgaaaaaaagggtttttagggggtgttcagattatgtaatctgaaaaaaat 41530707  T
Q  117 catgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactc-nnnnnnnactctataacaaaggaaaacatcatttcag 214  Q
    |||||||||||| ||||||||| || |||| |||||||||||||||||||||||||||||||        || || |||||||||||||||||||| | |    
T  41530706 catgtaacgcgccctattttttgagatttccggattacaaaattcggaaaaatccgtaactcatttttccaccctttaacaaaggaaaacatcattccgg 41530607  T
Q  215 attatgaaatcc 226  Q
    ||||| ||||||    
T  41530606 attataaaatcc 41530595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 177
Target Start/End: Original strand, 7971024 - 7971180
Alignment:
Q  28 tgctggtgttgtccggattacgtaatccggattgca------ccatagaaaaaatggtgttcaggcgattttcggattatgtaatcc-gaaaacatcatg 120  Q
    |||||||| |||||||||||||||||||||||||||      |||| ||||||| |||||| | | | | || |||||||||||||| |||||||||| |    
T  7971024 tgctggtgctgtccggattacgtaatccggattgcatcagcaccatggaaaaaagggtgtttatggggtgtttggattatgtaatccagaaaacatcacg 7971123  T
Q  121 taacgcgctctattttttaagtttctggattacaaaattcggaaaaatccgtaactc 177  Q
    || ||||  |||||||| |||||||  ||||||||||| ||||||||||||||||||    
T  7971124 tagcgcgtcctatttttgaagtttccagattacaaaatccggaaaaatccgtaactc 7971180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 71 - 177
Target Start/End: Complemental strand, 44106306 - 44106199
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||  |||||||||    
T  44106306 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatctggaaaaatc 44106207  T
Q  170 cgtaactc 177  Q
    ||| ||||    
T  44106206 cgttactc 44106199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 8885535 - 8885636
Alignment:
Q  77 ggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaac 175  Q
    |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| |||||||| |||| ||    
T  8885535 ggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgttac 8885634  T
Q  176 tc 177  Q
    ||    
T  8885635 tc 8885636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 177
Target Start/End: Complemental strand, 37248641 - 37248534
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaatc 169  Q
    |||||||||||| ||| | |||  ||||||||||||||| ||||||||| |||||||| ||| ||||||||||||  |||||||||||| | |||||| |    
T  37248641 aaaaatggtgtttagggggtttctggattatgtaatccggaaacatcatctaacgcgccctatttttttaagttttcggattacaaaatccagaaaaacc 37248542  T
Q  170 cgtaactc 177  Q
    ||||||||    
T  37248541 cgtaactc 37248534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 34853382 - 34853309
Alignment:
Q  101 tgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgta 173  Q
    ||||||||| |||||||||||||||||| ||||||||| ||||||  |||||||||||| |||||||| |||||    
T  34853382 tgtaatccggaaacatcatgtaacgcgccctattttttaaagttttcggattacaaaatccggaaaaacccgta 34853309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 177
Target Start/End: Original strand, 36404222 - 36404337
Alignment:
Q  61 gcaccatagaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttct-ggattacaaaatt 159  Q
    |||||||  |||||| |||||| ||| | |||||||||||| ||||||||||| |||||||||| ||| ||||||||| || || | ||||||||||||     
T  36404222 gcaccatgaaaaaaagggtgtttaggag-ttttcggattatataatccgaaaa-atcatgtaacacgccctattttttgagattttcggattacaaaatc 36404319  T
Q  160 cggaaaaatccgtaactc 177  Q
    ||||| ||||||||||||    
T  36404320 cggaataatccgtaactc 36404337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 172
Target Start/End: Complemental strand, 28916860 - 28916764
Alignment:
Q  77 ggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgt 172  Q
    |||||| ||| | ||| ||| |||||||||||  ||||||||| |||||||| ||||||||| ||||||| |||||||||||| |||||||| ||||    
T  28916860 ggtgtttagggggtttccggtttatgtaatccagaaacatcatttaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgt 28916764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 35676635 - 35676715
Alignment:
Q  92 ttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccg 171  Q
    |||||||||||||||||| ||| ||||| || ||||| |||||||||  |||||| |||||||||||| ||||||||||||    
T  35676635 ttcggattatgtaatccggaaaaatcatatagcgcgccctattttttgtagtttccggattacaaaatccggaaaaatccg 35676715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 42280967 - 42281077
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatc---atgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaa 166  Q
    ||||| |||||| ||| | ||| |||||||||||||| | |||||||   ||||||||||||||||||||| ||||||  ||||||| |||| |||||||    
T  42280967 aaaaagggtgtttagggggtttccggattatgtaatctggaaacatcatgatgtaacgcgctctattttttgaagttttcggattacgaaatccggaaaa 42281066  T
Q  167 atccgtaactc 177  Q
    |||||| ||||    
T  42281067 atccgttactc 42281077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 24627705 - 24627666
Alignment:
Q  24 ttggtgctggtgttgtccggattacgtaatccggattgca 63  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24627705 ttggtgctggtgttgtccggattacgtaatccggattgca 24627666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 40994869 - 40994808
Alignment:
Q  77 ggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt 138  Q
    |||||| ||| | ||||| |||||||||||||| |||||||||||||||||| |||||||||    
T  40994869 ggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctatttttt 40994808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 16310658 - 16310575
Alignment:
Q  95 ggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 177  Q
    ||||| ||||||||| ||| ||||| |||||| | ||||||||| ||||||| |||||||||||| |||||||| | |||||||    
T  16310658 ggattgtgtaatccggaaaaatcatctaacgcaccctattttttgaagtttccggattacaaaatccggaaaaacctgtaactc 16310575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 11698385 - 11698450
Alignment:
Q  94 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaat 158  Q
    |||||||||||||||| |||||||||||||| ||   |||||||| ||||||| ||||||||||||    
T  11698385 cggattatgtaatccggaaacatcatgtaacacgtcttattttttgaagtttccggattacaaaat 11698450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 230
Target Start/End: Complemental strand, 41328531 - 41328502
Alignment:
Q  201 aaacatcatttcagattatgaaatccgaaa 230  Q
    ||||||||||||||||||||||||||||||    
T  41328531 aaacatcatttcagattatgaaatccgaaa 41328502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 31234546 - 31234578
Alignment:
Q  24 ttggtgctggtgttgtccggattacgtaatccg 56  Q
    |||||||||||||||| ||||||||||||||||    
T  31234546 ttggtgctggtgttgttcggattacgtaatccg 31234578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 9573 - 9680
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||||||| | |||||||||||||||||||| |||||||||||||||||  ||||||||| ||||||| ||||||||||||||||||||| |    
T  9573 aaaaagggtgttcagggggttttcggattatgtaatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaattcggaaaaacc 9672  T
Q  170 cgtaactc 177  Q
    ||||||||    
T  9673 cgtaactc 9680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 70 - 247
Target Start/End: Complemental strand, 23523998 - 23523819
Alignment:
Q  70 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 168  Q
    |||||| |||||| ||| | |||  ||||||||||||||| |||||||||||||||||  ||||||||| ||||||| |||||||||||| || ||||||    
T  23523998 aaaaaagggtgtttagggggtttctggattatgtaatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaatccgaaaaaat 23523899  T
Q  169 ccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
    |||||||| |       || || |||||||||||||||||||| |  |||||||||||| |||||||||| | |||||||    
T  23523898 ccgtaactccatttttcaccctctaacaaaggaaaacatcattccgaattatgaaatcctaaaatctcaagggcattttt 23523819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 70 - 227
Target Start/End: Complemental strand, 49397100 - 49396941
Alignment:
Q  70 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 168  Q
    |||||||| |||| | | ||||||||||||||||||||| |||||||| ||||||||   ||||||||| ||||||| |||||||||||| |||||||||    
T  49397100 aaaaaatgatgtttaagggattttcggattatgtaatccaaaaacatcttgtaacgcatcctattttttgaagtttccggattacaaaatccggaaaaat 49397001  T
Q  169 ccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 227  Q
    |||||||| |       || |||||| |||||||||||||||| | ||||||||||||||    
T  49397000 ccgtaactccatttttcaccctataataaaggaaaacatcattccggattatgaaatccg 49396941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 29822687 - 29822603
Alignment:
Q  94 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 177  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| |||||||| |||||||||    
T  29822687 cggattatgtaatccgaaaacatcatgtaacgcgctgtattttttgaagtttccggattacaaaatccggaaaaacccgtaactc 29822603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 94 - 237
Target Start/End: Complemental strand, 32441879 - 32441734
Alignment:
Q  94 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctat 191  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| | ||||||||| ||||| |       || ||||    
T  32441879 cggattatgtaatccggaaacatcatgtaacgcgcgctattttttgaagtttccggattacaaaatccagaaaaatccttaactccatttttcaccctat 32441780  T
Q  192 aacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaa 237  Q
    |||||||||||||| |||| | |||||||||||||| ||| |||||    
T  32441779 aacaaaggaaaacaccattccggattatgaaatccggaaacctcaa 32441734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 71 - 232
Target Start/End: Complemental strand, 38536261 - 38536098
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | ||| |||||||||||||| | |||||||||||||| ||| ||||||||| ||||||| | |||||||||| |||||||| |    
T  38536261 aaaaaaggtgtttagggggtttccggattatgtaatctggaaacatcatgtaacacgccctattttttgaagtttccgaattacaaaatccggaaaaacc 38536162  T
Q  170 cgtaac-tcnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaat 232  Q
    |||||| ||       || |||||||||||||||||| |||||| |||||||||||||| ||||    
T  38536161 cgtaacttcatttttcaccctataacaaaggaaaacaccatttcggattatgaaatccggaaat 38536098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 92 - 246
Target Start/End: Complemental strand, 38416635 - 38416479
Alignment:
Q  92 ttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaatccgtaactc-nnnnnnnactct 189  Q
    |||||||||||||||||||||| ||||||||||| || ||| ||||||| ||||| ||||||||||||| | ||||||||| |||||        || ||    
T  38416635 ttcggattatgtaatccgaaaaaatcatgtaacgtgccctatttttttatgtttccggattacaaaatttgaaaaaatccgcaactcattttttcaccct 38416536  T
Q  190 ataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacatttt 246  Q
    |||||||||||||||| |  ||||||||||||||| ||||||  |||| ||||||||    
T  38416535 ataacaaaggaaaacacctattcagattatgaaattcgaaaacttcaaggacatttt 38416479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 103 - 247
Target Start/End: Original strand, 6228919 - 6229065
Alignment:
Q  103 taatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctataacaaagga 200  Q
    ||||||| |||||||||||||||||| ||||||||| ||||||| || ||||||||| |||||||||||||| || |       || |||||||||||||    
T  6228919 taatccggaaacatcatgtaacgcgccctattttttgaagtttccgggttacaaaatccggaaaaatccgtagctccatttttcaccctataacaaagga 6229018  T
Q  201 aaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
    ||||| |||| | |||||||||||||  ||| ||||| |||||||||    
T  6229019 aaacaccattccggattatgaaatcctgaaacctcaaggacattttt 6229065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 17933238 - 17933315
Alignment:
Q  96 gattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgt 172  Q
    |||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||  ||||||||||||    
T  17933238 gattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttctggattacaaaatctggaaaaatccgt 17933315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 34972956 - 34972867
Alignment:
Q  70 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaat 158  Q
    ||||||||||||| ||| | ||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||  |||||||||||    
T  34972956 aaaaaatggtgtttagggggttttcggattatgtagtccgaaaacatcatgtaacgcgccctatttttttaagtttccagattacaaaat 34972867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 69 - 177
Target Start/End: Original strand, 48319139 - 48319247
Alignment:
Q  69 gaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaa 167  Q
    ||||||| |||||| ||| | |||||||||||||||||||  |||||||||||||||||| ||||||||| ||||||| ||||||| |||| ||||||||    
T  48319139 gaaaaaaaggtgtttagggggttttcggattatgtaatccagaaacatcatgtaacgcgccctattttttgaagtttccggattac-aaatccggaaaaa 48319237  T
Q  168 tccgtaactc 177  Q
    ||||| ||||    
T  48319238 tccgtcactc 48319247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 72 - 247
Target Start/End: Original strand, 6003748 - 6003927
Alignment:
Q  72 aaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta---ttttttaagtttctggattacaaaattcggaaaaat 168  Q
    |||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||| ||||    ||||||||||||| |||||| |||||||| ||||||    
T  6003748 aaaaaggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcactcttattttttttaagtttccggattataaaattcgaaaaaat 6003847  T
Q  169 ccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
    |||||||| |       || ||||||||||||||| || |||| | |||||||||||||  ||| ||||| || ||||||    
T  6003848 ccgtaactccatttttcaccctataacaaaggaaaccaccattccggattatgaaatccagaaacctcaaggatattttt 6003927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 71 - 172
Target Start/End: Original strand, 46440350 - 46440452
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||  ||| ||||||||||||| |||||| |||||||||||||| |    
T  46440350 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgtcctatttttttaagtttccggattataaaattcggaaaaacc 46440449  T
Q  170 cgt 172  Q
    |||    
T  46440450 cgt 46440452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 227
Target Start/End: Original strand, 3703326 - 3703484
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    |||||||||||| ||| | | |||| ||||||||||||||||| |||||||||| ||  ||||||||| ||||||  |||||||||||| || |||||||    
T  3703326 aaaaatggtgtttagggggtgttcgaattatgtaatccgaaaaaatcatgtaacacgtcctattttttgaagttttcggattacaaaatccgaaaaaatc 3703425  T
Q  170 cgtaactc-nnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 227  Q
    ||||||||        || ||||||||||||||||||  | ||| ||||||||||||||    
T  3703426 cgtaactcattttttcaccctataacaaaggaaaacactagttcggattatgaaatccg 3703484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 227
Target Start/End: Original strand, 25539024 - 25539182
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    |||||| ||||| ||| | ||| |||||||||||||||  ||||||||||||||  || ||||||||| ||||||| |||||||||||| |||||||| |    
T  25539024 aaaaatagtgtttagggggtttccggattatgtaatccagaaacatcatgtaacatgccctattttttgaagtttccggattacaaaatccggaaaaacc 25539123  T
Q  170 cgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 227  Q
    ||||||| |       ||  ||||||||||||||||| |||| | ||||||||||||||    
T  25539124 cgtaactccatttttcaccatataacaaaggaaaacaccattccggattatgaaatccg 25539182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 177
Target Start/End: Complemental strand, 19835611 - 19835504
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttt-taagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||| | ||||||||  ||||||| |||||||||||| |||||||| |    
T  19835611 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcaccctatttttcaaagtttccggattacaaaatccggaaaaacc 19835512  T
Q  170 cgtaactc 177  Q
    ||| ||||    
T  19835511 cgttactc 19835504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 7931743 - 7931642
Alignment:
Q  77 ggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaac 175  Q
    |||||| ||| | ||| |||||||||||||||| |||||| ||||||||||| ||||||||| ||||||| ||||| |||||| |||||||| |||| ||    
T  7931743 ggtgtttagggggtttccggattatgtaatccggaaacataatgtaacgcgccctattttttgaagtttccggattgcaaaatccggaaaaacccgttac 7931644  T
Q  176 tc 177  Q
    ||    
T  7931643 tc 7931642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 25491471 - 25491568
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaa 167  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||  ||||||||| ||||||| |||||||||||| || |||||    
T  25491471 aaaaaaggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaatccgaaaaaa 25491568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 25752539 - 25752620
Alignment:
Q  90 ttttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatcc 170  Q
    |||||||||||||||||| | ||||||||||||| |||| ||||||||| || |||| |||||||||||| |||||||||||    
T  25752539 ttttcggattatgtaatctggaaacatcatgtaatgcgccctattttttgaaatttccggattacaaaatccggaaaaatcc 25752620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 69 - 177
Target Start/End: Original strand, 54631537 - 54631646
Alignment:
Q  69 gaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaa 167  Q
    |||||||  ||||| ||| | ||| |||||||||||||||| ||||||||||||||||||  || ||||| ||||||| |||||||||||| ||||||||    
T  54631537 gaaaaaaatgtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccatactttttgaagtttccggattacaaaatccggaaaaa 54631636  T
Q  168 tccgtaactc 177  Q
     |||| ||||    
T  54631637 cccgttactc 54631646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 2506107 - 2506215
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctc-tatttttt-aagtttctggattacaaaattcggaaaaat 168  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| | |||||||| | ||||||| || |||||||| ||||||||    
T  2506107 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgcccttattttttgatgtttctgaatcacaaaatttggaaaaat 2506206  T
Q  169 ccgtaactc 177  Q
    |||| ||||    
T  2506207 ccgttactc 2506215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 71 - 177
Target Start/End: Complemental strand, 40703755 - 40703648
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | ||||| | |||||||||||| ||||||||||||| || | ||||||||| || |||| |||||||||||| ||||||||||    
T  40703755 aaaaagggtgtttagggggttttcaggttatgtaatccggaaacatcatgtaatgcaccctattttttgaaatttccggattacaaaatccggaaaaatc 40703656  T
Q  170 cgtaactc 177  Q
    ||| ||||    
T  40703655 cgttactc 40703648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 8106483 - 8106387
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaa 166  Q
    |||||||||||| ||| | | ||||||||||||||| || ||| |||||||| ||||| ||||||||| ||||||  |||||||||||| |||||||    
T  8106483 aaaaatggtgtttagggggtgttcggattatgtaatacggaaaaatcatgtagcgcgccctattttttgaagttttcggattacaaaatccggaaaa 8106387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 41413270 - 41413329
Alignment:
Q  188 ctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
    ||||||||||| ||||||  ||| | |||||||||||||||||||||||| |||||||||    
T  41413270 ctataacaaagaaaaacactattccggattatgaaatccgaaaatctcaaggacattttt 41413329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 50392529 - 50392592
Alignment:
Q  115 atcatgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactc 177  Q
    |||||||||||||| | ||||||| || |||| |||||||||||| ||||||||||||||||||    
T  50392529 atcatgtaacgcgccccattttttgagatttccggattacaaaatccggaaaaatccgtaactc 50392592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 34972846 - 34972787
Alignment:
Q  188 ctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 247  Q
    |||||||||||||||||| |||| | |||||||||||||| ||| ||||| | |||||||    
T  34972846 ctataacaaaggaaaacaccattccggattatgaaatccggaaacctcaagggcattttt 34972787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 31582498 - 31582560
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctat 133  Q
    ||||| |||||| ||| | ||| |||||||||||||| ||||||||||||||| |||| ||||    
T  31582498 aaaaagggtgtttagggggtttccggattatgtaatcagaaaacatcatgtaatgcgccctat 31582560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 53894108 - 53894169
Alignment:
Q  112 aacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgt 172  Q
    ||||||||||||||||| ||||||||| |||||||  |||| |||||| |||||||| ||||    
T  53894108 aacatcatgtaacgcgccctattttttgaagtttcctgattgcaaaatccggaaaaacccgt 53894169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 41413199 - 41413231
Alignment:
Q  94 cggattatgtaatccgaaaacatcatgtaacgc 126  Q
    |||||||||||||||| ||||||||||||||||    
T  41413199 cggattatgtaatccggaaacatcatgtaacgc 41413231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 142039 - 142138
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||  |||||||||    
T  142039 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatctggaaaaatc 142138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 3494 - 3568
Alignment:
Q  94 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaa 167  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| |||||||| |||||||||||||| |||||    
T  3494 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttctagattacaaaattcgaaaaaa 3568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 177
Target Start/End: Complemental strand, 23205 - 23098
Alignment:
Q  71 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 169  Q
    ||||| |||||| ||| | ||| |||||||| ||||||| ||||||||||||| || | ||||||||| ||||||| |||||| ||||||||||||||||    
T  23205 aaaaaaggtgtttagggggtttccggattatataatccggaaacatcatgtaatgcaccctattttttgaagtttccggattataaaattcggaaaaatc 23106  T
Q  170 cgtaactc 177  Q
    ||| ||||    
T  23105 cgttactc 23098  T

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Target: scaffold0016 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 205834 - 205873
Alignment:
Q  24 ttggtgctggtgttgtccggattacgtaatccggattgca 63  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  205834 ttggtgctggtgatgtctggattacgtaatccggattgca 205873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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