View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10428_high_11 (Length: 240)

Name: NF10428_high_11
Description: NF10428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10428_high_11
NF10428_high_11
[»] chr3 (1 HSPs)
chr3 (1-222)||(49628569-49628794)
[»] chr4 (1 HSPs)
chr4 (1-103)||(36833656-36833758)
[»] chr6 (1 HSPs)
chr6 (1-120)||(20545838-20545956)
[»] chr1 (2 HSPs)
chr1 (1-103)||(632419-632519)
chr1 (1-56)||(19092811-19092866)
[»] chr5 (2 HSPs)
chr5 (1-56)||(37302347-37302402)
chr5 (9-65)||(36916688-36916744)
[»] chr7 (1 HSPs)
chr7 (77-118)||(27908331-27908372)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 49628569 - 49628794
Alignment:
Q  1 tttatttgaaatatgatgaaataaattgaataaagaatgcaatagaaccacatttacgcaagagagaaacaatgattatacaagtcttgcatctcaatag 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49628569 tttatttgaaatatgatgaaagaaattgaataaagaatgcaatagaaccacatttacgcaagagagaaacaatgattatacaagtcttgcatctcaatag 49628668  T
Q  101 caacccttcttatttattctacatgctattagacaaaacatctctcgttgaagatgctcctaatgat----atcacggaatgtaaaatgtctacaatcct 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||    
T  49628669 caacccttcttatttattctacatgctattagacaaaacatctctcgttgaagatgctcctaatgatcaagatcacggaatgtaaaatgtctacaatcct 49628768  T
Q  197 cctagcaacctaattaaatcaatgtt 222  Q
    ||||||||||||||||||||||||||    
T  49628769 cctagcaacctaattaaatcaatgtt 49628794  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 36833656 - 36833758
Alignment:
Q  1 tttatttgaaatatgatgaaataaattgaataaagaatgcaatagaaccacatttacgcaagagagaaacaatgattatacaagtcttgcatctcaatag 100  Q
    ||||||||||||||||| ||| || |||||||||||||||||| ||| |||||||| |||||||||| |||||| || |||||| |||||||||||||||    
T  36833656 tttatttgaaatatgataaaagaagttgaataaagaatgcaatggaaacacatttatgcaagagagagacaatgcttgtacaagccttgcatctcaatag 36833755  T
Q  101 caa 103  Q
    |||    
T  36833756 caa 36833758  T

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Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 20545838 - 20545956
Alignment:
Q  1 tttatttgaaatatgatgaaataaattgaataaagaatgcaatagaaccacatttacgcaagagagaaacaatgattatacaagtcttgcatctcaatag 100  Q
    |||||||||||||| |||||| || || |||||| |||||||| |||||||||||| |||||||||| |   ||||| |||||| |||||||||||||||    
T  20545838 tttatttgaaatattatgaaagaagttaaataaa-aatgcaatggaaccacatttatgcaagagagagatggtgattgtacaagccttgcatctcaatag 20545936  T
Q  101 caacccttcttatttattct 120  Q
    ||| ||||||||||| ||||    
T  20545937 caatccttcttatttcttct 20545956  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 632419 - 632519
Alignment:
Q  1 tttatttgaaatatgatgaaataaattgaataaagaatgcaatagaaccacatttacgcaagagagaaacaatgattatacaagtcttgcatctcaatag 100  Q
    ||||||| |||| |||||||| || || |||||||||| |||| |||||||||||| |||| ||||  |||||| ||||||||||||| |||||||||||    
T  632419 tttatttaaaatttgatgaaagaatttaaataaagaatacaatggaaccacatttatgcaaaagag--acaatgtttatacaagtcttacatctcaatag 632516  T
Q  101 caa 103  Q
    |||    
T  632517 caa 632519  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 19092866 - 19092811
Alignment:
Q  1 tttatttgaaatatgatgaaataaattgaataaagaatgcaatagaaccacattta 56  Q
    ||||| |||||||| || |||||| ||||||||||||| ||||| |||||||||||    
T  19092866 tttatatgaaatataataaaataagttgaataaagaatacaataaaaccacattta 19092811  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37302347 - 37302402
Alignment:
Q  1 tttatttgaaatatgatgaaataaattgaataaagaatgcaatagaaccacattta 56  Q
    ||||||||||||||||||||| |||||||||||| ||||||||  ||||| |||||    
T  37302347 tttatttgaaatatgatgaaagaaattgaataaacaatgcaatgaaaccatattta 37302402  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 36916688 - 36916744
Alignment:
Q  9 aaatatgatgaaataaattgaataaagaatgcaatagaaccacatttacgcaagaga 65  Q
    ||||||||||||| || |||||||||| |||| ||||| ||||||||| ||||||||    
T  36916688 aaatatgatgaaagaagttgaataaagtatgcgatagacccacatttatgcaagaga 36916744  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 27908331 - 27908372
Alignment:
Q  77 tatacaagtcttgcatctcaatagcaacccttcttatttatt 118  Q
    |||||||| ||||||||| |||||||| ||||||||||||||    
T  27908331 tatacaagccttgcatcttaatagcaatccttcttatttatt 27908372  T

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