View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10428_low_1 (Length: 600)

Name: NF10428_low_1
Description: NF10428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10428_low_1
NF10428_low_1
[»] chr5 (2 HSPs)
chr5 (159-593)||(3234029-3234463)
chr5 (20-157)||(3234493-3234630)
[»] chr7 (18 HSPs)
chr7 (464-590)||(22036933-22037059)
chr7 (455-590)||(22021230-22021365)
chr7 (168-221)||(22020907-22020960)
chr7 (442-590)||(16839478-16839626)
chr7 (441-590)||(18326045-18326194)
chr7 (442-590)||(16846561-16846709)
chr7 (168-223)||(22036619-22036674)
chr7 (168-223)||(16839857-16839912)
chr7 (168-223)||(16846940-16846995)
chr7 (253-343)||(22028261-22028354)
chr7 (243-293)||(22039810-22039860)
chr7 (481-590)||(22019217-22019326)
chr7 (34-123)||(22020748-22020837)
chr7 (173-222)||(22028172-22028221)
chr7 (250-362)||(16846801-16846913)
chr7 (250-293)||(18325839-18325882)
chr7 (245-287)||(22018904-22018946)
chr7 (250-362)||(16841265-16841377)
[»] chr2 (2 HSPs)
chr2 (168-206)||(10205910-10205948)
chr2 (77-117)||(10206024-10206064)
[»] chr4 (1 HSPs)
chr4 (168-219)||(2910533-2910584)


Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 159 - 593
Target Start/End: Complemental strand, 3234463 - 3234029
Alignment:
Q  159 aagagagtcgtggctccgtttctggaaccctgctacaaggaccatatcggataaattagggcattgccataatcccgtgttaccttaccggttgacattt 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3234463 aagagagtcgtggctccgtttctggaaccctgctacaaggaccatatcggataaattagggcattgccataatcccgtgttaccttaccggttgacattt 3234364  T
Q  259 ggttatgataattcaatggatacttataaggtagttgccttagaaccagaggcaagagtttttagtttccgcgataatgtttggaaaactattcaaagat 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3234363 ggttatgataattcaatggatacttataaggtagttgccttagaaccagaggcaagagtttttagtttccgcgataatgtttggaaaactattcaaagat 3234264  T
Q  359 ttcctctctatcatcgcctaaattggagtgtgcatttgagtggtaatgttaattggttggcaactcgtcgcaactaccaccgttatgattgcaagaatat 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3234263 ttcctctctatcatcgcctaaattggagtgtgcatttgagtggtaatgttaattggttggcaactcttcgcaactaccaccgttatgattgcaagaatat 3234164  T
Q  459 tccttttgagcaatatgtgattatttcacttgatctgagtaaaaagacatacaaagagttgcttcttcctcaaggttttgatcaagtgccatgttttgag 558  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3234163 tccttttgagcaatatgtgattatttcactttatctgagtaaacagacatacaaagagttgcttcttcctcaaggttttgatcaagtgccatgttttgag 3234064  T
Q  559 ccatctctatgtgttttgatggattgcctttgctt 593  Q
    ||||||||||||||||||||||||||||| |||||    
T  3234063 ccatctctatgtgttttgatggattgcctctgctt 3234029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 3234630 - 3234493
Alignment:
Q  20 catagcagtgttgtaccaatctccttgagtcgtttgctggagagtccttcaaattcgatcacctttaccgaagatccttactataatttgaaggataaag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3234630 catagcagtgttgtaccaatctccttgagtcgtttgctggagagtccatcaaattcgatcacccttaccgaagatccttactataatttgaaggataaag 3234531  T
Q  120 attgtccatcggttattggttcctgtaacggattaata 157  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3234530 attgtccatcggttattggttcctgtaacggattaata 3234493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 464 - 590
Target Start/End: Original strand, 22036933 - 22037059
Alignment:
Q  464 ttgagcaatatgtgattatttcacttgatctgagtaaaaagacatacaaagagttgcttcttcctcaaggttttgatcaagtgccatgttttgagccatc 563  Q
    ||||||||| | ||||| || ||||||||||| ||| | |||||| ||||||||||||||| |||| |||||||||  |||| ||||||| |||||||||    
T  22036933 ttgagcaatttatgattgttgcacttgatctgcgtacagagacatgcaaagagttgcttctccctcgaggttttgacgaagtcccatgttatgagccatc 22037032  T
Q  564 tctatgtgttttgatggattgcctttg 590  Q
    ||||||||| |||||||||||| ||||    
T  22037033 tctatgtgtgttgatggattgcatttg 22037059  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 455 - 590
Target Start/End: Original strand, 22021230 - 22021365
Alignment:
Q  455 atattccttttgagcaatatgtgattatttcacttgatctgagtaaaaagacatacaaagagttgcttcttcctcaaggttttgatcaagtgccatgttt 554  Q
    ||||| || ||||||||| |  |||| |||||||||||||  |||   |||||| ||||||||||||||| || | |||||||||| |||| ||| ||||    
T  22021230 atattactattgagcaatttaagattgtttcacttgatcttggtacggagacatgcaaagagttgcttctcccgcgaggttttgatgaagtcccaagttt 22021329  T
Q  555 tgagccatctctatgtgttttgatggattgcctttg 590  Q
    |||||||||||||||||| |||||||||||| ||||    
T  22021330 tgagccatctctatgtgtgttgatggattgcatttg 22021365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 22020907 - 22020960
Alignment:
Q  168 gtggctccgtttctggaaccctgctacaaggaccatatcggataaattagggca 221  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  22020907 gtggctccgtttctggaaccctgctacaaggacaatatctgataaattagggca 22020960  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 442 - 590
Target Start/End: Complemental strand, 16839626 - 16839478
Alignment:
Q  442 tatgattgcaagaatattccttttgagcaatatgtgattatttcacttgatctgagtaaaaagacatacaaagagttgcttcttcctcaaggttttgatc 541  Q
    |||||||||||| || || || ||||||||| ||||||||||||||||||| || | |   ||||||||||| | |||||||  |||| |||||||| |     
T  16839626 tatgattgcaaggatcttactgttgagcaatttgtgattatttcacttgatttgggcacggagacatacaaatatttgcttccccctcgaggttttgttg 16839527  T
Q  542 aagtgccatgttttgagccatctctatgtgttttgatggattgcctttg 590  Q
    ||||||||| | || |||||||| | ||| | |||||||| ||||||||    
T  16839526 aagtgccatttattaagccatctatttgtctgttgatggactgcctttg 16839478  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 441 - 590
Target Start/End: Original strand, 18326045 - 18326194
Alignment:
Q  441 ttatgattgcaagaatattccttttgagcaatatgtgattatttcacttgatctgagtaaaaagacatacaaagagttgcttcttcctcaaggttttgat 540  Q
    |||||||||||||||||||  | ||||||||| || |||||||||||||||| || | |   |||||| |||||| |||||||  |||| ||||||||      
T  18326045 ttatgattgcaagaatattattgttgagcaatttgcgattatttcacttgatttgggcacggagacatgcaaagatttgcttccgcctcgaggttttgca 18326144  T
Q  541 caagtgccatgttttgagccatctctatgtgttttgatggattgcctttg 590  Q
     |||| |||  | || |||||||||||||||  ||| |||||||||||||    
T  18326145 gaagtaccacatgttaagccatctctatgtgagttgctggattgcctttg 18326194  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 442 - 590
Target Start/End: Complemental strand, 16846709 - 16846561
Alignment:
Q  442 tatgattgcaagaatattccttttgagcaatatgtgattatttcacttgatctgagtaaaaagacatacaaagagttgcttcttcctcaaggttttgatc 541  Q
    |||||||||||| || || || ||||||||| |||||||||||| |||||| || | |   ||||||||||| | |||||||  |||| |||||||| |     
T  16846709 tatgattgcaaggatcttactgttgagcaatttgtgattatttctcttgatttgggcacggagacatacaaatatttgcttccccctcgaggttttgttg 16846610  T
Q  542 aagtgccatgttttgagccatctctatgtgttttgatggattgcctttg 590  Q
    ||||||||| | || |||||||| | ||| | |||||||| ||||||||    
T  16846609 aagtgccatttattaagccatctatttgtctgttgatggactgcctttg 16846561  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 22036619 - 22036674
Alignment:
Q  168 gtggctccgtttctggaaccctgctacaaggaccatatcggataaattagggcatt 223  Q
    ||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||    
T  22036619 gtggctccgtttctggaaccctgctaccagggcaatatctgataaattagggcatt 22036674  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 16839912 - 16839857
Alignment:
Q  168 gtggctccgtttctggaaccctgctacaaggaccatatcggataaattagggcatt 223  Q
    |||| |||| ||||||||||||||||| ||||| ||||| ||||||||||||||||    
T  16839912 gtggttccggttctggaaccctgctaccaggacaatatcagataaattagggcatt 16839857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 16846995 - 16846940
Alignment:
Q  168 gtggctccgtttctggaaccctgctacaaggaccatatcggataaattagggcatt 223  Q
    |||| ||||||| |||||||||||||| ||||| ||||| ||||||||||||||||    
T  16846995 gtggttccgtttttggaaccctgctaccaggacaatatcagataaattagggcatt 16846940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 253 - 343
Target Start/End: Original strand, 22028261 - 22028354
Alignment:
Q  253 acatttggttatgataattcaatggatacttataaggtagttgccttagaa---ccagaggcaagagtttttagtttccgcgataatgtttgga 343  Q
    ||||||||||||||||||||||  |||||||| |||||||| || ||||||    |||  || ||||||||||||||  |||||||||||||||    
T  22028261 acatttggttatgataattcaactgatacttacaaggtagtggctttagaagacgcagcagcgagagtttttagtttgggcgataatgtttgga 22028354  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 293
Target Start/End: Original strand, 22039810 - 22039860
Alignment:
Q  243 ttaccggttgacatttggttatgataattcaatggatacttataaggtagt 293  Q
    ||||||| |||||||||| |||||||||||||  |||||||||||||||||    
T  22039810 ttaccggatgacatttggatatgataattcaacagatacttataaggtagt 22039860  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 481 - 590
Target Start/End: Original strand, 22019217 - 22019326
Alignment:
Q  481 atttcacttgatctgagtaaaaagacatacaaagagttgcttcttcctcaaggttttgatcaagtgccatgttttgagccatctctatgtgttttgatgg 580  Q
    ||||||||||||||| | | | ||||||||||||||||| |||  |||| ||| |||||||||||||||  |    ||||||| ||||||||  || |||    
T  22019217 atttcacttgatctggggacagagacatacaaagagttgattccgcctcgaggatttgatcaagtgccacttgccaagccatcactatgtgtactggtgg 22019316  T
Q  581 attgcctttg 590  Q
    ||||||||||    
T  22019317 attgcctttg 22019326  T

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Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 22020748 - 22020837
Alignment:
Q  34 accaatctccttgagtcgtttgctggagagtccttcaaattcgatcacctttaccgaagatccttactataatttgaaggataaagattg 123  Q
    ||||||||||||||||| |||| |||||||||| || ||  | || ||| ||||||| ||||||||||||  |||||| ||||| |||||    
T  22020748 accaatctccttgagtcatttgttggagagtccatcgaagcccataacccttaccgacgatccttactatcttttgaatgataaggattg 22020837  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 22028172 - 22028221
Alignment:
Q  173 tccgtttctggaaccctgctacaaggaccatatcggataaattagggcat 222  Q
    ||||| |||||||||||||||| ||||| ||||| |||||||||||||||    
T  22028172 tccgtgtctggaaccctgctaccaggacaatatctgataaattagggcat 22028221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 362
Target Start/End: Complemental strand, 16846913 - 16846801
Alignment:
Q  250 ttgacatttggttatgataattcaatggatacttataaggtagttgccttagaaccagaggcaagagtttttagtttccgcgataatgtttggaaaacta 349  Q
    |||||||||||||||||||||  ||  |||||||||||||||||   |||| | | || ||| | |||||||||| |  ||||||||| ||||| || ||    
T  16846913 ttgacatttggttatgataatgaaaaagatacttataaggtagtgaacttataccgaggggcgaaagtttttagtctgggcgataatgcttggagaaata 16846814  T
Q  350 ttcaaagatttcc 362  Q
    ||||||| |||||    
T  16846813 ttcaaagttttcc 16846801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 293
Target Start/End: Original strand, 18325839 - 18325882
Alignment:
Q  250 ttgacatttggttatgataattcaatggatacttataaggtagt 293  Q
    |||||||||||||||||||||||||  || ||||||||||||||    
T  18325839 ttgacatttggttatgataattcaaaagacacttataaggtagt 18325882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 287
Target Start/End: Original strand, 22018904 - 22018946
Alignment:
Q  245 accggttgacatttggttatgataattcaatggatacttataa 287  Q
    |||||||| |||||||||||||||| |||| ||||||||||||    
T  22018904 accggttggcatttggttatgataaatcaacggatacttataa 22018946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 362
Target Start/End: Complemental strand, 16841377 - 16841265
Alignment:
Q  250 ttgacatttggttatgataattcaatggatacttataaggtagttgccttagaaccagaggcaagagtttttagtttccgcgataatgtttggaaaacta 349  Q
    ||||||||||||||||||||||| |  || ||||||||||||||   |||| | | || ||| | |||||||||| |  ||||||||| ||||| || ||    
T  16841377 ttgacatttggttatgataattccaaagacacttataaggtagtgaacttataccgaggggcgaaagtttttagtctgggcgataatgcttggagaaata 16841278  T
Q  350 ttcaaagatttcc 362  Q
    || |||| |||||    
T  16841277 tttaaagttttcc 16841265  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 10205948 - 10205910
Alignment:
Q  168 gtggctccgtttctggaaccctgctacaaggaccatatc 206  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  10205948 gtggctccgtttctggaaccctgctacaaggacaatatc 10205910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 10206064 - 10206024
Alignment:
Q  77 atcacctttaccgaagatccttactataatttgaaggataa 117  Q
    |||||| |||||||||||||||||||| | |||||||||||    
T  10206064 atcacccttaccgaagatccttactatcaattgaaggataa 10206024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 2910533 - 2910584
Alignment:
Q  168 gtggctccgtttctggaaccctgctacaaggaccatatcggataaattaggg 219  Q
    |||||||||||| ||||||||||| |||||||| |||||  |||||||||||    
T  2910533 gtggctccgtttgtggaaccctgccacaaggacaatatctaataaattaggg 2910584  T

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