View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10428_low_11 (Length: 274)
Name: NF10428_low_11
Description: NF10428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10428_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 49628527 - 49628314
Alignment:
| Q |
1 |
ttaagagttattcagtttgaggaaatgagtgtttattagacattaaaattaaagttgaagtgattatgtgatgtgactattttaagctacctcttaataa |
100 |
Q |
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| T |
49628527 |
ttaagagttattccgtttgaggaaatgagtgtttattagacattaaaattaaagttgaagtgattatttgatgtgactactttaagctacctcttaataa |
49628428 |
T |
|
| Q |
101 |
gagtaccaatgaagatgttagtatgtaggctagtaagaggaagtattaaaaaagaacattacctagtcgtcactcttgaaactacctcttaataagagta |
200 |
Q |
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| T |
49628427 |
gagtaccattgaagatgttagtaagtaggttagtaagaggaagtattaaaaaagaacattacctagccgtcacccttgaagctacctcttaataagagta |
49628328 |
T |
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| Q |
201 |
ccattgaagaacct |
214 |
Q |
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|||||||||||||| |
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| T |
49628327 |
ccattgaagaacct |
49628314 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 3336831 - 3336783
Alignment:
| Q |
24 |
aatgagtgtttattagacattaaaattaaagttgaagtgattatgtgat |
72 |
Q |
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| T |
3336831 |
aatgagtgtttattaaacattaaaattaaaaatgaagtgaatatgtgat |
3336783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 36833592 - 36833540
Alignment:
| Q |
23 |
aaatgagtgtttattagacattaaaattaaagttgaagtgattatgtgatgtg |
75 |
Q |
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||||||||||||||||||||||||| | || |||||||| ||||||||||| |
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| T |
36833592 |
aaatgagtgtttattagacattaaaggttaaaatgaagtgaatatgtgatgtg |
36833540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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