View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10428_low_12 (Length: 264)
Name: NF10428_low_12
Description: NF10428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10428_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 28198842 - 28198975
Alignment:
| Q |
97 |
gcgccattgtcatcggtcacggcaagaacaaccaggtcacataataaactctcatgcagaagtgaactccaacataactttctactatagaagtccatag |
196 |
Q |
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| T |
28198842 |
gcgccattgccatcggtcacggcaagaacaaccaggtcacataataaactcccatgcagaagtgaactccaacataactttctactatagaagtccatag |
28198941 |
T |
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| Q |
197 |
atgtacgactcaaataaatacaaaacaatttgca |
230 |
Q |
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| T |
28198942 |
atgtacgactcaaataaatacaaaacaatttgca |
28198975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 28198746 - 28198787
Alignment:
| Q |
1 |
taataagatattaattccctggttacaaaactttaatcatgt |
42 |
Q |
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| T |
28198746 |
taataagatattaattccctggttacaaaactttaatcatgt |
28198787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 28199004 - 28199042
Alignment:
| Q |
224 |
atttgcattacacattttcacaatttaattacaaaattg |
262 |
Q |
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| T |
28199004 |
attttcattacgcattttcacaatttaattacaaaattg |
28199042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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