View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10428_low_13 (Length: 260)
Name: NF10428_low_13
Description: NF10428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10428_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 4709404 - 4709176
Alignment:
| Q |
20 |
gtctgcaggctgtgcctttatcgcactgatactgtttcttgttggcactccaaagtaccgacatttcaagcccagtggcaaccctcttgccaggttctgc |
119 |
Q |
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| T |
4709404 |
gtctgcaggctgtgcctttatcgcactgatactgtttcttgttggcactccaaagtaccgacatttcaagcccagtggcaaccctcttgccaggttctgc |
4709305 |
T |
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| Q |
120 |
caagtccttgttgctgcatcaaggaaagttaaagttgaaatgccatcaaatggagacgacttgtacaacatggatacaaaggagtcttctaccgatgtga |
219 |
Q |
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| T |
4709304 |
caagtccttgttgctgcatcaaggaaagttaaagttgaaatgccatcaaatggagacgacttgtacaacatggatacaaaggagtcttctaccgatgtga |
4709205 |
T |
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| Q |
220 |
acagaaaaatcctccacacacacaggttc |
248 |
Q |
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| T |
4709204 |
acagaaaaatcctccacacacacgggttc |
4709176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 210
Target Start/End: Original strand, 40743149 - 40743310
Alignment:
| Q |
49 |
tactgtttcttgttggcactccaaagtaccgacatttcaagcccagtggcaaccctcttgccaggttctgccaagtccttgttgctgcatcaaggaaagt |
148 |
Q |
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| T |
40743149 |
tactttttcttgttggcaccccaaaatatagacactttaaaccttgtggcaatcctctttctagattctgccaagtgtttttcgctgcttcaaggaaatt |
40743248 |
T |
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| Q |
149 |
taaagttgaaatgccatcaaatggagacgacttgtacaacatggatacaaaggagtcttcta |
210 |
Q |
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| T |
40743249 |
gggagttcaaatgacttcaaatggagatgacttgtatgtcatagatgaaaaggagtcttcta |
40743310 |
T |
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