View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10428_low_14 (Length: 257)
Name: NF10428_low_14
Description: NF10428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10428_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 23982766 - 23983003
Alignment:
| Q |
1 |
atgatgattttgttaaggatctatggaacgcactgcctgatgagacctttgaacaattttacagttgtttaccaatctcgtctcttaaaagggtatgtca |
100 |
Q |
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| T |
23982766 |
atgatgattttgttaaggatctatggaacgcactgcctgatgagacctttgaacaattttacagttgtttaccaatctcgtctcttaaaagggtatgtca |
23982865 |
T |
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| Q |
101 |
catgatgtatatctaacttctctaaccaaatttaattcatatgcatgttttaaaattgttttatagcgacaatcaatcacaacttgctaagaaaacaaac |
200 |
Q |
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| T |
23982866 |
catgatgtatatctaacttctctaacccaatttaattcatatgcgtgttttaaaatggttttacaccgacaatcaatcacaacttgctaagaaaacaaac |
23982965 |
T |
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| Q |
201 |
aaattgcattattgttacatctttggcagctcccatta |
238 |
Q |
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| T |
23982966 |
aaattgcattattgttacatctatggcagctcccatta |
23983003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 23989466 - 23989679
Alignment:
| Q |
19 |
atctatggaacgcactgcctgatgagacctttgaacaattttacagttgtttaccaatctcgtctcttaaaagggtatgtcacatgatgtatatctaact |
118 |
Q |
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| T |
23989466 |
atctatggaacggactgcacaatgagatctttgaacatgtttacagttgtttcccggtctcatctcttaaaagggtatgtcacatgatgtatatctaact |
23989565 |
T |
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| Q |
119 |
tctctaaccaaatttaattcatatgcatgttttaaaattgttttatagcgacaatcaatcacaacttgctaagaaaacaaacaaattgcattattgttac |
218 |
Q |
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| T |
23989566 |
tctctaacccaatttaattcatatgcatgttctaaaattgttttacaccgacaatcaatcacaacttgctaagaaaacaaacaaattgcattattgttac |
23989665 |
T |
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| Q |
219 |
atctttggcagctc |
232 |
Q |
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| T |
23989666 |
atctttggcagctc |
23989679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 228
Target Start/End: Original strand, 23965498 - 23965688
Alignment:
| Q |
40 |
atgagacctttgaacaattttacagttgtttaccaatctcgtctcttaaaagggtatgtcacatgatgtatatctaacttctctaaccaaatttaattca |
139 |
Q |
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| T |
23965498 |
atgagatctttgaacatgtttacagttgtttctctgtctcatctctgaatagggtatgtcaccttatgcatatctaacttctctaacccaatttcattct |
23965597 |
T |
|
| Q |
140 |
tatgcatgttttaaaattgttttatagcgacaatcaatcacaacttgctaagaaaacaaacaaattgcattattg--ttacatctttggca |
228 |
Q |
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| T |
23965598 |
tatgtacagtttaaaattgttttacaacgacaatcaatcactactcaccaagaaaactaacaaattgtaatatagaattacatctttggca |
23965688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 42351381 - 42351330
Alignment:
| Q |
151 |
taaaattgttttatagcgacaatcaatcacaacttgctaagaaaacaaacaa |
202 |
Q |
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| T |
42351381 |
taaaattgttttaaaccgacaatcaatcataacttgctaagacaacaaacaa |
42351330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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