View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10428_low_18 (Length: 246)
Name: NF10428_low_18
Description: NF10428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10428_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 7498271 - 7498496
Alignment:
| Q |
1 |
taagaatttatgcaatgtttaccaatactgatgatagcacatttgtaagcttcttgcacttgtattattttcttaaactgaagtttcaaagccttgtttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7498271 |
taagaatttatgcaatgtttaccaatactgatgatagcacatttgtaagcttcttgcacttgtattattttcttaaactgaagtttcaaagccttgtttg |
7498370 |
T |
|
| Q |
101 |
tttgcaattgtttatgtttgaacaaaaattgcaggatccatcaattggtgcttactcaagaatcaatgaactagtcaaaggctttgataagaaaatcatc |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7498371 |
tttgcaattgtttatgtt--aacaaaaattgcaggatccatcaattggtgcttactcaagaatcaatgaactagtcaaaggctttgataagaaaatcatc |
7498468 |
T |
|
| Q |
201 |
caagcagcttttaaggtatataatatgt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
7498469 |
caagcagcttttaaggtatataatatgt |
7498496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University