View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10428_low_19 (Length: 243)
Name: NF10428_low_19
Description: NF10428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10428_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 29304823 - 29305058
Alignment:
| Q |
1 |
aatgcaatcacaaacacactcaagaagctccccccatccgccgagagaaaatatgtacagcctttcggtgaataaagcgatcatctcacacagcgaacga |
100 |
Q |
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| T |
29304823 |
aatgcaatcacaaacatactcaagaagctcctcccaaccgccgagagaaaatatgtacagcctttcggtgaataaagcgatcatctcacacagcgaacga |
29304922 |
T |
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| Q |
101 |
aacagaatttcttctgattctaccttaagcgaataaagaagcggattttttaatgcaattaggataatcgaacacattcgactcgttggatttttgaatt |
200 |
Q |
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| T |
29304923 |
aacagaatttcttcggattctaccttaagcgaataaagaagcggattttttaatgcagttaggataatcgaacacattcgactcgttggatttttgaatt |
29305022 |
T |
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| Q |
201 |
ctaccttaagaagatcgacggtttggcttcatctct |
236 |
Q |
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| T |
29305023 |
ctaccttaagaagatcgacggtttggcttcgtctct |
29305058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 29322078 - 29322142
Alignment:
| Q |
70 |
gaataaagcgatcatctcacacagcgaacgaaacagaatttcttctgattctaccttaagcgaat |
134 |
Q |
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||||||| | ||||| || || |||||| |||||||||||||||| ||||||||||| ||||||| |
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| T |
29322078 |
gaataaacccatcatttcgcatagcgaaggaaacagaatttcttcagattctaccttgagcgaat |
29322142 |
T |
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