View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10428_low_2 (Length: 560)

Name: NF10428_low_2
Description: NF10428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10428_low_2
NF10428_low_2
[»] chr5 (5 HSPs)
chr5 (130-450)||(23226363-23226667)
chr5 (14-59)||(23226736-23226781)
chr5 (513-545)||(23226314-23226346)
chr5 (130-183)||(18707267-18707321)
chr5 (14-59)||(15858147-15858192)
[»] chr4 (5 HSPs)
chr4 (14-59)||(18635968-18636013)
chr4 (24-59)||(45801346-45801381)
chr4 (130-183)||(18568028-18568082)
chr4 (14-59)||(23962988-23963033)
chr4 (14-59)||(26886738-26886783)
[»] chr7 (3 HSPs)
chr7 (24-59)||(34287644-34287679)
chr7 (24-59)||(45867573-45867608)
chr7 (19-59)||(16861016-16861056)
[»] chr3 (3 HSPs)
chr3 (21-59)||(18461768-18461806)
chr3 (14-59)||(2397927-2397972)
chr3 (14-59)||(28843873-28843918)
[»] chr1 (2 HSPs)
chr1 (130-183)||(4694940-4694994)
chr1 (14-59)||(48524632-48524677)
[»] chr8 (1 HSPs)
chr8 (14-59)||(12649621-12649666)
[»] chr2 (1 HSPs)
chr2 (14-59)||(18508596-18508641)
[»] scaffold0024 (1 HSPs)
scaffold0024 (132-183)||(88665-88717)
[»] chr6 (1 HSPs)
chr6 (130-183)||(8129536-8129591)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 2e-90; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 130 - 450
Target Start/End: Complemental strand, 23226667 - 23226363
Alignment:
Q  130 gataaaagactaaagtgttatctgaaattaagtaaagaattaaaagtgtaatttaacatattatttattactcctactatcccaaattatgaacaaacta 229  Q
    |||||||||  ||||| |||| ||||||||| ||| | |||||||| ||||||||||||||||||||||||||| |||||||||||||| | |           
T  23226667 gataaaagatcaaagtattatatgaaattaaataagggattaaaagagtaatttaacatattatttattactcccactatcccaaattaggca------- 23226575  T
Q  230 taatttaagacaannnnnnnctctgacttataattgtataattaattactactactaattggtagactttatannnnnnnggaaagtttgaatttaaagg 329  Q
           ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  23226574 -------agacaatttttttctctgacttataattgtataattaattactactactaattggtagactttatatttttttggaaagtttgaatttaaagg 23226482  T
Q  330 ttaaacattgaaagtttgagaaacacgaatacttggtaaattaaagtattctctcattttcatgctatgagacatgagcaatccaatatcctagaatgct 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  23226481 ttaaacattgaaagtttgagaaacacgaatacttggtaaattaaagtat--tctcactttcatgctatgagacatgagcaatccaatatcgtagaatgct 23226384  T
Q  430 tgaatgatatacagtaaacgt 450  Q
    |||||||||||||||||||||    
T  23226383 tgaatgatatacagtaaacgt 23226363  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 23226781 - 23226736
Alignment:
Q  14 agatgaagaccatagatttaaagattgaaagatcataagaaaataa 59  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  23226781 agatgaagaccatagatttaaagattgaaaggtcataagaaaataa 23226736  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 513 - 545
Target Start/End: Complemental strand, 23226346 - 23226314
Alignment:
Q  513 ttcaagtagaattttgcaatacacatgaataat 545  Q
    |||||||||||||||||||||||||||||||||    
T  23226346 ttcaagtagaattttgcaatacacatgaataat 23226314  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 18707321 - 18707267
Alignment:
Q  130 gataaaagactaaagtgttatctgaaattaag-taaagaattaaaagtgtaattt 183  Q
    |||||||||| ||| ||||| ||||||||||| ||||| ||||||||||||||||    
T  18707321 gataaaagaccaaactgttacctgaaattaagttaaaggattaaaagtgtaattt 18707267  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 15858147 - 15858192
Alignment:
Q  14 agatgaagaccatagatttaaagattgaaagatcataagaaaataa 59  Q
    |||| |||| |||||||||||||||||||| |||||| ||||||||    
T  15858147 agataaagatcatagatttaaagattgaaatatcatacgaaaataa 15858192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 18636013 - 18635968
Alignment:
Q  14 agatgaagaccatagatttaaagattgaaagatcataagaaaataa 59  Q
    ||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  18636013 agatgaagaccatggatttgaagattgaaaggtcataagaaaataa 18635968  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 45801381 - 45801346
Alignment:
Q  24 catagatttaaagattgaaagatcataagaaaataa 59  Q
    ||||||||| ||||||||||||||||||||||||||    
T  45801381 catagatttgaagattgaaagatcataagaaaataa 45801346  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 18568082 - 18568028
Alignment:
Q  130 gataaaagactaaagtgttatctgaaattaagtaaaga-attaaaagtgtaattt 183  Q
    |||||| ||| ||| |||||||||||||||||| |||| ||||||||||||||||    
T  18568082 gataaaggaccaaactgttatctgaaattaagttaagagattaaaagtgtaattt 18568028  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 23962988 - 23963033
Alignment:
Q  14 agatgaagaccatagatttaaagattgaaagatcataagaaaataa 59  Q
    ||||||| ||||||||||| ||||||||||  ||||||||||||||    
T  23962988 agatgaaaaccatagatttgaagattgaaatgtcataagaaaataa 23963033  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 26886783 - 26886738
Alignment:
Q  14 agatgaagaccatagatttaaagattgaaagatcataagaaaataa 59  Q
    |||||| || ||||||||| |||||||||||| |||||||||||||    
T  26886783 agatgaggatcatagatttgaagattgaaagaccataagaaaataa 26886738  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 34287679 - 34287644
Alignment:
Q  24 catagatttaaagattgaaagatcataagaaaataa 59  Q
    ||||||||| ||||||||||||||||||||||||||    
T  34287679 catagatttgaagattgaaagatcataagaaaataa 34287644  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 45867608 - 45867573
Alignment:
Q  24 catagatttaaagattgaaagatcataagaaaataa 59  Q
    ||||||||| ||||||||||||||||||||||||||    
T  45867608 catagatttgaagattgaaagatcataagaaaataa 45867573  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 16861016 - 16861056
Alignment:
Q  19 aagaccatagatttaaagattgaaagatcataagaaaataa 59  Q
    |||| |||||||||||||| ||||||| |||||||||||||    
T  16861016 aagatcatagatttaaagactgaaagaccataagaaaataa 16861056  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 18461768 - 18461806
Alignment:
Q  21 gaccatagatttaaagattgaaagatcataagaaaataa 59  Q
    ||||||||||||||||| ||||||| |||||||||||||    
T  18461768 gaccatagatttaaagactgaaagaccataagaaaataa 18461806  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 2397927 - 2397972
Alignment:
Q  14 agatgaagaccatagatttaaagattgaaagatcataagaaaataa 59  Q
    |||||||||||||| |||| ||||||||||  ||||||||||||||    
T  2397927 agatgaagaccataaatttgaagattgaaatgtcataagaaaataa 2397972  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 28843873 - 28843918
Alignment:
Q  14 agatgaagaccatagatttaaagattgaaagatcataagaaaataa 59  Q
    |||||| || ||||||||| |||||||||||| |||||||||||||    
T  28843873 agatgaggatcatagatttgaagattgaaagaccataagaaaataa 28843918  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 4694994 - 4694940
Alignment:
Q  130 gataaaagactaaagtgttatctgaaattaagtaaaga-attaaaagtgtaattt 183  Q
    |||||||||||||| |||||||||||||||| | |||| | ||||||||||||||    
T  4694994 gataaaagactaaactgttatctgaaattaaattaagagactaaaagtgtaattt 4694940  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 48524632 - 48524677
Alignment:
Q  14 agatgaagaccatagatttaaagattgaaagatcataagaaaataa 59  Q
    |||||| || ||||||||| |||||||||||| |||||||||||||    
T  48524632 agatgaggatcatagatttgaagattgaaagaccataagaaaataa 48524677  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 12649621 - 12649666
Alignment:
Q  14 agatgaagaccatagatttaaagattgaaagatcataagaaaataa 59  Q
    ||||| |||||| | ||||||||||||||||| |||||||||||||    
T  12649621 agatggagaccacatatttaaagattgaaagaccataagaaaataa 12649666  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 18508596 - 18508641
Alignment:
Q  14 agatgaagaccatagatttaaagattgaaagatcataagaaaataa 59  Q
    |||||||| ||||||||||||||||  |||| ||||||||||||||    
T  18508596 agatgaaggccatagatttaaagatgaaaaggtcataagaaaataa 18508641  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 88665 - 88717
Alignment:
Q  132 taaaagactaaagtgttatctgaaattaagt-aaagaattaaaagtgtaattt 183  Q
    |||| |||||||  ||||||||||||||||| || ||||||||||||||||||    
T  88665 taaaggactaaatcgttatctgaaattaagtcaaggaattaaaagtgtaattt 88717  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 8129591 - 8129536
Alignment:
Q  130 gataaaagactaaagtgttatctgaaattaagt--aaagaattaaaagtgtaattt 183  Q
    |||||| ||| ||| ||||||||||||||||||  ||||| |||||||||||||||    
T  8129591 gataaaggaccaaactgttatctgaaattaagttaaaagacttaaaagtgtaattt 8129536  T

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