View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10428_low_24 (Length: 227)
Name: NF10428_low_24
Description: NF10428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10428_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 23982484 - 23982697
Alignment:
| Q |
1 |
atgagaatcagttgtatgatgattcagtacctgagcatcaacagaatgaagatgaggatgatcagatgagtgatgaggatcattatgaggatatgttatg |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23982484 |
atgaggatcagttgtatgatgattcagtacctgagcatcaacagaatgaagatgaggatgatcagatgagtgatgaggatcattatgaggatatgttatg |
23982583 |
T |
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| Q |
101 |
cgaagtttcaaacgagggtcggttgaatgaggatcatcgaagtgtgaagtttaatcatgggtggaatgattatttgcatgagggtcaatgcagtcaggtt |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23982584 |
cgaagtttcaaacgacggtcggttgaatgaggatcatcgaagtgtgaagtttaatcatgggtggaatgattatttgcatgagggtcaatgcaatcaggtt |
23982683 |
T |
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| Q |
201 |
tcaattgagggtca |
214 |
Q |
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|||||||||||||| |
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| T |
23982684 |
tcaattgagggtca |
23982697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 23989265 - 23989390
Alignment:
| Q |
1 |
atgagaatcagttgtatgatgattcagtacctgagcatcaacagaatgaagatgaggatgatcagatgagtgatgaggatcattatgaggatatgttatg |
100 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| || ||||||||||| |
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| T |
23989265 |
atgaggatcagttgtatgatgattca---cctgagcatcaacagaatgaatatgaggatgatcagatgagtgaggaggatcattacgacgatatgttatg |
23989361 |
T |
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| Q |
101 |
cgaagtttcaaacgagggtcggttgaatg |
129 |
Q |
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||||||||||| |||| ||||||||||| |
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| T |
23989362 |
tgaagtttcaaaggaggatcggttgaatg |
23989390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 23982689 - 23982737
Alignment:
| Q |
179 |
tgagggtcaatgcagtcaggtttcaattgagggtcagtggaatgagaat |
227 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23982689 |
tgagggtcaatgcaatcaggtttcaattgagggtcagtggaatgagaat |
23982737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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