View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10428_low_5 (Length: 475)
Name: NF10428_low_5
Description: NF10428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10428_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 5839473 - 5839931
Alignment:
| Q |
1 |
ccgttagtaactaacaatgggtaattccaaaacggggtaagcatagtatagttgggagttggcagttgccagggctaatgttagcttcaaaatgtgtata |
100 |
Q |
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| T |
5839473 |
ccgttagtaactaacaataggtaattccaaaacggggtaagcatagtatagttgggagttggcagttg----ggctaatgttagcttcaaaatgtgtata |
5839568 |
T |
|
| Q |
101 |
tgttaggtaagttattgattattgatcatagttactcatatgtgggtaaggtcgatcgagcggagtgagatatgctttcaggatagatcagggatcgtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||| ||||||||| |||||||||| |
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| T |
5839569 |
tgttaggtaagttattgattattgatcatagttactcatacgtgggtaaggtcgatcgaacagagtgagatatgctttcgggatagatcggggatcgtgt |
5839668 |
T |
|
| Q |
201 |
gaagccctcagctttatggttatgaggtaatattttaatctcgagttccattctttggtgggacaatttttgatcgattaggatatccttatctcacagc |
300 |
Q |
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||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||| | | |||| ||| ||||| || ||||| |||| |||| | |
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| T |
5839669 |
gaagccctccgctttattgttaggaggtaatattttaatctcgagttccattctttggtagaataattattggtcgatcagaatatctttatttcacggt |
5839768 |
T |
|
| Q |
301 |
tgaattctgaattacaaaggctcatttcccctgagaatcggagggctaacgccc-nnnnnnntgttggatacatatgctgcaatag-tttcaacaatgat |
398 |
Q |
| |
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|| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||| |
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| T |
5839769 |
caaactctgaattacaaaggttcatttcccctgagaatcggagggctaacgcccaaaaaaaatgttggatgcatatgctgcaatagttttcaacaatgat |
5839868 |
T |
|
| Q |
399 |
caaaggaatgaaacaatacctatctgaaattaggggaactgctaaatgttgtggagcatattg |
461 |
Q |
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| T |
5839869 |
caaaggaatgaaacaatacctatctgaaattgggggaactgctaaatattgtggagcatattg |
5839931 |
T |
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