View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10428_low_6 (Length: 386)

Name: NF10428_low_6
Description: NF10428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10428_low_6
NF10428_low_6
[»] chr4 (1 HSPs)
chr4 (42-370)||(13554675-13555006)
[»] chr7 (3 HSPs)
chr7 (42-370)||(9688298-9688629)
chr7 (211-324)||(34148359-34148471)
chr7 (211-324)||(34178653-34178765)
[»] chr1 (4 HSPs)
chr1 (212-324)||(42914121-42914233)
chr1 (209-305)||(4694099-4694194)
chr1 (209-319)||(51411023-51411132)
chr1 (209-310)||(43912820-43912920)
[»] chr5 (2 HSPs)
chr5 (209-305)||(24233574-24233670)
chr5 (209-319)||(35246056-35246165)
[»] chr6 (1 HSPs)
chr6 (209-319)||(18093659-18093768)
[»] chr3 (1 HSPs)
chr3 (232-315)||(31881945-31882028)
[»] chr2 (1 HSPs)
chr2 (333-365)||(19391883-19391915)


Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 42 - 370
Target Start/End: Complemental strand, 13555006 - 13554675
Alignment:
Q  42 cacagattagtgcaagcaatcctccatcactccatttatgttcttaaaaaggctaattttaggtgtgagtgaaaatagttaattttaacttcaaataacg 141  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  13555006 cacagattagtgcaagcaatcctccatcactctatttatgttcttaaaaaggctaattttaggtttgagtgaaaatagttaattttaatttcaaataacg 13554907  T
Q  142 aatttctaaaacaatcatgattagagagaataataaatagcataactgtctttctctgtgnnnnnnnggcaacagatactagatttgtatttcttctgag 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||       | ||||||||||| |||||||||||||||||||    
T  13554906 aatttctaaaacaatcatgattagagagaataataaatagcataattgtctttctatgtgtttttttgacaacagatactggatttgtatttcttctgag 13554807  T
Q  242 gagtgtttcacttaacacaccttgtgcaagatgaatttttctcggtgattattaatttcatttttgtttcttc---aaaaataaaactgtctttcttatt 338  Q
    |||  |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||| ||||||||   ||||| |||| |||||||||||||    
T  13554806 gagcatttcacttaacacaccttgtacaagatgaattgttcttggtgattattaatttcattttggtttcttcaaaaaaaaaaaaattgtctttcttatt 13554707  T
Q  339 taaagcaagaggtatctaggatacctaactcc 370  Q
    ||||||||||||||||||||||||||||||||    
T  13554706 taaagcaagaggtatctaggatacctaactcc 13554675  T

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Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 42 - 370
Target Start/End: Complemental strand, 9688629 - 9688298
Alignment:
Q  42 cacagattagtgcaagcaatcctccatcactccatttatgttcttaaaaaggctaattttaggtgtgagtgaaaatagttaattttaacttcaaataacg 141  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||    
T  9688629 cacagattagtgcaagcaatcctccatcactctatttatgttcttaaaaaggctaaatttaggtttgagtgaaaatagttaattttaatttcaaataacg 9688530  T
Q  142 aatttctaaaacaatcatgattagagagaataataaatagcataactgtctttctctgtgnnnnnnnggcaacagatactagatttgtatttcttctgag 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||       | ||||||||||| |||||||||||||||||||    
T  9688529 aatttctaaaacaatcatgattagagagaataataaatagcataattgtctttctatgtgtttttttgacaacagatactggatttgtatttcttctgag 9688430  T
Q  242 gagtgtttcacttaacacaccttgtgcaagatgaatttttctcggtgattattaatttcatttttgtttcttc---aaaaataaaactgtctttcttatt 338  Q
    |||  |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||| ||||||||   ||||| |||| |||||||||||||    
T  9688429 gagcatttcacttaacacaccttgtacaagatgaattgttcttggtgattattaatttcattttggtttcttcaaaaaaaaaaaaattgtctttcttatt 9688330  T
Q  339 taaagcaagaggtatctaggatacctaactcc 370  Q
    ||||||||||||||||||||||||||||||||    
T  9688329 taaagcaagaggtatctaggatacctaactcc 9688298  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 324
Target Start/End: Complemental strand, 34148471 - 34148359
Alignment:
Q  211 caacagatactagatttgtatttcttctgaggagtgtttcacttaacacaccttgtgcaagatgaatttttctcggtgattattaatttcatttttgttt 310  Q
    ||||||||||| |||||||| | ||| ||||||||  ||| |||  |||||||||||| ||||||||   ||| |||||||||| ||||||||||   ||    
T  34148471 caacagatacttgatttgtact-cttttgaggagtaattctctttgcacaccttgtgcgagatgaatcgctcttggtgattatttatttcattttgtctt 34148373  T
Q  311 cttcaaaaataaaa 324  Q
    ||||||||| ||||    
T  34148372 cttcaaaaaaaaaa 34148359  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 324
Target Start/End: Original strand, 34178653 - 34178765
Alignment:
Q  211 caacagatactagatttgtatttcttctgaggagtgtttcacttaacacaccttgtgcaagatgaatttttctcggtgattattaatttcatttttgttt 310  Q
    ||||||||||| |||||||| | ||| ||||||||  ||| |||  |||||||||||| ||||||||   ||| |||||||||| ||||||||||   ||    
T  34178653 caacagatacttgatttgtact-cttttgaggagtaattctctttgcacaccttgtgcgagatgaatcgctcttggtgattatttatttcattttgtctt 34178751  T
Q  311 cttcaaaaataaaa 324  Q
    ||||||||| ||||    
T  34178752 cttcaaaaaaaaaa 34178765  T

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Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 212 - 324
Target Start/End: Original strand, 42914121 - 42914233
Alignment:
Q  212 aacagatactagatttgtatttcttctgaggagtgtttcacttaacacaccttgtgcaagatgaatttttctcggtgattattaatttcatttttgtttc 311  Q
    |||||||||| || ||||||||||| ||||||| ||||| |||| |||||||| ||||||||||||  |||| ||||||||||||||||||||| |||||    
T  42914121 aacagatactggacttgtatttcttttgaggagcgtttctcttagcacaccttatgcaagatgaatcgttcttggtgattattaatttcattttggtttc 42914220  T
Q  312 ttcaaaaataaaa 324  Q
    || ||||| ||||    
T  42914221 tttaaaaaaaaaa 42914233  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 209 - 305
Target Start/End: Original strand, 4694099 - 4694194
Alignment:
Q  209 ggcaacagatactagatttgtatttcttctgaggagtgtttcacttaacacaccttgtgcaagatgaatttttctcggtgattattaatttcatttt 305  Q
    ||||||||||||| |||||||||| ||| ||||||||| ||| ||| ||||||||| ||||||||||||  |||| |||||||||| ||||||||||    
T  4694099 ggcaacagatacttgatttgtatt-cttttgaggagtgattctctttacacaccttatgcaagatgaatcgttcttggtgattatttatttcatttt 4694194  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 209 - 319
Target Start/End: Original strand, 51411023 - 51411132
Alignment:
Q  209 ggcaacagatactagatttgtatttcttctgaggagtgtttcacttaacacaccttgtgcaagatgaatttttctcggtgattattaatttcatttttgt 308  Q
    ||||||||||||| |||||||||| ||| ||||||||| ||| |||  ||||||||| || |||||||||  ||| |||||||||| |||||||||| |     
T  51411023 ggcaacagatacttgatttgtatt-cttttgaggagtgattctctttgcacaccttgcgcgagatgaattgctcttggtgattatttatttcattttggc 51411121  T
Q  309 ttcttcaaaaa 319  Q
    |||||||||||    
T  51411122 ttcttcaaaaa 51411132  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 310
Target Start/End: Complemental strand, 43912920 - 43912820
Alignment:
Q  209 ggcaacagatactagatttgtatttcttctgaggagtgtttcacttaacacaccttgtgcaagatgaatttttctcggtgattattaatttcatttttgt 308  Q
    ||||||| |||||  ||||||||| ||| ||||||||| ||| |||  |||||||||||| ||||||||| |||| | |||||||| |||||||||| ||    
T  43912920 ggcaacaaatactttatttgtatt-cttttgaggagtgattctctttgcacaccttgtgcgagatgaattgttcttgatgattatttatttcattttggt 43912822  T
Q  309 tt 310  Q
    ||    
T  43912821 tt 43912820  T

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Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 24233670 - 24233574
Alignment:
Q  209 ggcaacagatactagatttgtatttcttctgaggagtgtttcacttaacacaccttgtgcaagatgaatttttctcggtgattattaatttcatttt 305  Q
    |||||||||| || ||| ||| ||| || ||||||||||||| |||| || ||||||||||||||||||| |||| ||||||||||||||| |||||    
T  24233670 ggcaacagattctggatgtgtttttattttgaggagtgtttctcttagcataccttgtgcaagatgaattgttcttggtgattattaattttatttt 24233574  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 209 - 319
Target Start/End: Complemental strand, 35246165 - 35246056
Alignment:
Q  209 ggcaacagatactagatttgtatttcttctgaggagtgtttcacttaacacaccttgtgcaagatgaatttttctcggtgattattaatttcatttttgt 308  Q
    ||||||||||||| |||||||||| ||| |||||| || ||| ||||||||||||||||| |||| | |  |||| ||||||||||||||||||||| |     
T  35246165 ggcaacagatactggatttgtatt-cttttgaggaatgattctcttaacacaccttgtgcgagataattcgttcttggtgattattaatttcattttggc 35246067  T
Q  309 ttcttcaaaaa 319  Q
    ||||| |||||    
T  35246066 ttcttaaaaaa 35246056  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 319
Target Start/End: Original strand, 18093659 - 18093768
Alignment:
Q  209 ggcaacagatactagatttgtatttcttctgaggagtgtttcacttaacacaccttgtgcaagatgaatttttctcggtgattattaatttcatttttgt 308  Q
    ||||||||||||| | ||||||||  || ||||||||| ||| |||| |||| ||||||| ||||||||   ||  ||||||||||||||||||||| |     
T  18093659 ggcaacagatactggttttgtattattt-tgaggagtgattctcttagcacatcttgtgcgagatgaatcgctcctggtgattattaatttcattttggc 18093757  T
Q  309 ttcttcaaaaa 319  Q
    ||||| |||||    
T  18093758 ttcttaaaaaa 18093768  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 315
Target Start/End: Complemental strand, 31882028 - 31881945
Alignment:
Q  232 ttcttctgaggagtgtttcacttaacacaccttgtgcaagatgaatttttctcggtgattattaatttcatttttgtttcttca 315  Q
    ||||| ||||||||| ||| |||  ||||||||||||||||||| ||  ||  ||||||||||||| ||||||| | |||||||    
T  31882028 ttcttttgaggagtgattctctttgcacaccttgtgcaagatgagttgctcctggtgattattaatctcattttggcttcttca 31881945  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 365
Target Start/End: Original strand, 19391883 - 19391915
Alignment:
Q  333 cttatttaaagcaagaggtatctaggataccta 365  Q
    |||||||||||||||||||||||| ||||||||    
T  19391883 cttatttaaagcaagaggtatctaagataccta 19391915  T

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