View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10428_low_7 (Length: 377)
Name: NF10428_low_7
Description: NF10428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10428_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 29 - 367
Target Start/End: Complemental strand, 38590360 - 38590021
Alignment:
| Q |
29 |
atagtcttcggtatataattaagacactcatagctatggactatttgtatacatgtaaaaaggataagttaagtagtttaccaaggaaaatgaaaaatat |
128 |
Q |
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| T |
38590360 |
atagtcttcagtatataattaagacactcatagctatggactatttgtatacatgtaaaaaggataagttaagtagtttaccaaggaaaatgaaaaatat |
38590261 |
T |
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| Q |
129 |
aacatgaaaatatattttaaattcatagtgttgttattaacaaaccgtacgggagaaccgctgtgtagaacaattttgatcatgctttacttgcctttca |
228 |
Q |
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| T |
38590260 |
aacatgaaaatatattttaaattcatagtgttgttattaacaaaccgtacgggagaaccgctatgtagaacaattttgattatgctttacttgcctttca |
38590161 |
T |
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| Q |
229 |
atcaactccaatattaccaaattgcta-ccctcaatccactaggggtctatttcccaaaaaattggatggttnnnnnnnngtgtggtttttaacatttta |
327 |
Q |
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| T |
38590160 |
accaactccaatgttaccaaaatgttaccccccaaaccactaggggtctatttcccaaaaaattggatggttaaaaaaaagtgtggtttttaacatttta |
38590061 |
T |
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| Q |
328 |
ccttctcaagatgcaagtttttcaattttaaaatcctttg |
367 |
Q |
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| T |
38590060 |
ccttctcaagatgcaagtttttcaattttaaaatcctttg |
38590021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 38634205 - 38634118
Alignment:
| Q |
54 |
actcatagctatggactatttgtatacatgtaaaaaggataagttaagtagtttaccaaggaaaatgaaaaatataacatgaaaatatat |
143 |
Q |
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| T |
38634205 |
actcatagctatggactatttgta--catgtaaaaaggataaatgatgtggtttccaaaggaaaatgaaaaatattacatggaaatatat |
38634118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 311 - 367
Target Start/End: Complemental strand, 38634096 - 38634040
Alignment:
| Q |
311 |
tggtttttaacattttaccttctcaagatgcaagtttttcaattttaaaatcctttg |
367 |
Q |
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| T |
38634096 |
tggtttttaacatcttacctcctcatgatgcaagtttttcaattttaaaatcctttg |
38634040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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