View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10428_low_8 (Length: 359)
Name: NF10428_low_8
Description: NF10428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10428_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 53430799 - 53431055
Alignment:
| Q |
1 |
aaattatcagggacagtttttgaaataaccttaatagttgttgtgttatatcctatgtaacacaagaagttcaagtagtcaatggtgctggtttcataaa |
100 |
Q |
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| T |
53430799 |
aaattatcagggacagtttttgaaataaccttaatagttgttgtgttatatcctatgtaacacaagaagttcaagtagtcaatggtgctggtttcataaa |
53430898 |
T |
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| Q |
101 |
caagacctggtcggtatgattcagttggtgttatttcacctgctccatagtcataaggtgtggcaatcgaccctaactctgttgtaatgggacccttcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
53430899 |
caagacctggtcggtatgattcagttggtgttatttcacctgctccatagtcataaggtgtggcaatcgaccctaaatctgttgtaatgggatccttcaa |
53430998 |
T |
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| Q |
201 |
attgttaacttgagttgctgcatttagaaaaaataggaatttatgagttgatagata |
257 |
Q |
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| T |
53430999 |
gttgttaacttgagttgctgaatttagaaaaaataggaatttatgagttgatagata |
53431055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 5 - 230
Target Start/End: Original strand, 26095190 - 26095415
Alignment:
| Q |
5 |
tatcagggacagtttttgaaataaccttaatagttgttgtgttatatcctatgtaacacaagaagttcaagtagtcaatggtgctggtttcataaacaag |
104 |
Q |
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| T |
26095190 |
tatcagggacagtttttgaaataaccttaatggtggttgtgttatatcctatataacacaagaagttcaagtagtcaatggtgctggtttcataaacgag |
26095289 |
T |
|
| Q |
105 |
acctggtcggtatgattcagttggtgttatttcacctgctccatagtcataaggtgtggcaatcgaccctaactctgttgtaatgggacccttcaaattg |
204 |
Q |
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| T |
26095290 |
ccctggttggagtggttcagttgttgttatccccccagctccatagtcataaggtgtggcaattaaccctaaatctgttgcaatgggacccttcatattg |
26095389 |
T |
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| Q |
205 |
ttaacttgagttgctgcatttagaaa |
230 |
Q |
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| T |
26095390 |
ttaatttgagttgctgcatttagaaa |
26095415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 5 - 233
Target Start/End: Complemental strand, 48375013 - 48374785
Alignment:
| Q |
5 |
tatcagggacagtttttgaaataaccttaatagttgttgtgttatatcctatgtaacacaagaagttcaagtagtcaatggtgctggtttcataaacaag |
104 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| | |||||||||||||||||||| ||||||||||| || |
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| T |
48375013 |
tatcagggacagtttttgaaataaccttaatagtggttgtgttgtatcctatgtaacacaagtaattcaagtagtcaatggtgctagtttcataaacgag |
48374914 |
T |
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| Q |
105 |
acctggtcggtatgattcagttggtgttatttcacctgctccatagtcataaggtgtggcaatcgaccctaactctgttgtaatgggacccttcaaattg |
204 |
Q |
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| T |
48374913 |
acctggttggaatgattcaattgttgttatgtcccctgctccatagtcataaggtgtggcaactgaccctaaatctgtagtaatgggagccttcatatta |
48374814 |
T |
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| Q |
205 |
ttaacttgagttgctgcatttagaaaaaa |
233 |
Q |
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|||| ||| |||||||||| | ||||||| |
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| T |
48374813 |
ttaatttgtgttgctgcatatcgaaaaaa |
48374785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 53422843 - 53423068
Alignment:
| Q |
8 |
cagggacagtttttgaaataaccttaatagttg-ttgtgttatatcctatgtaacacaagaagttcaagtagtcaatggtgctggtttcataaacaagac |
106 |
Q |
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||||||| |||||||| ||| ||||||| || | |||| || ||||||| |||||||||| |||||||||||||||||||||||||||||||||| || | |
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| T |
53422843 |
cagggacggtttttgagatagccttaattgtgggttgtattgtatcctaggtaacacaagtagttcaagtagtcaatggtgctggtttcataaactagcc |
53422942 |
T |
|
| Q |
107 |
ctggtcggtatgattcagttggtgttatttcacctgctccatagtcataaggtgtggcaatcgaccctaactctgttgtaatgggacccttcaaattgtt |
206 |
Q |
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| T |
53422943 |
ctggttggaatgattcagatattgtaatttcccctgctccatagtcataaggtgtggcaattgaccctaaatccgttgtaatgggatccttcatattgtt |
53423042 |
T |
|
| Q |
207 |
aacttgagttgctgcatttagaaaaa |
232 |
Q |
| |
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|| |||||||||||||||| |||||| |
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| T |
53423043 |
aatttgagttgctgcattttgaaaaa |
53423068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 50 - 232
Target Start/End: Original strand, 53307688 - 53307870
Alignment:
| Q |
50 |
atcctatgtaacacaagaagttcaagtagtcaatggtgctggtttcataaacaagacctggtcggtatgattcagttggtgttatttcacctgctccata |
149 |
Q |
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||||||||||||||||| |||| | ||||||||||||||| ||||||||||| || || ||| || ||| |||||||| ||||||||| ||||||||||| |
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| T |
53307688 |
atcctatgtaacacaagtagtttaggtagtcaatggtgctagtttcataaactagcccgggttggaatggttcagttgttgttatttctcctgctccata |
53307787 |
T |
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| Q |
150 |
gtcataaggtgtggcaatcgaccctaactctgttgtaatgggacccttcaaattgttaacttgagttgctgcatttagaaaaa |
232 |
Q |
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|||||||||||||||||| ||||| || | || ||||||||| |||||| |||||||| ||||| ||||||||||| ||||| |
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| T |
53307788 |
gtcataaggtgtggcaattgaccccaaattcgtggtaatgggagccttcatattgttaatttgagctgctgcatttataaaaa |
53307870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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