View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10428_low_9 (Length: 323)
Name: NF10428_low_9
Description: NF10428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10428_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 21 - 304
Target Start/End: Original strand, 51030474 - 51030757
Alignment:
| Q |
21 |
tttggtttcttcgaaaaggcctcggctaaacaccttgctaaaaccactccatcctctaaagcagaacaccccccttgaccaagatcaggtgtcatagggt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51030474 |
tttggtttcttcgaaaaggcctcggctaaacaccttgctaaaaccactccatcctctaaagcagaacaccccccttgaccaagatcaggtgtcatagggt |
51030573 |
T |
|
| Q |
121 |
gtaaagcatctccagcaacacaaacattgcctttactaatatttcccatcataagctcccaaggatgtctatgtctcaatggagctgattgaaatgcatc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51030574 |
gtaaagcatctccagcaacacaaacattgcctttactaatatttcccatcataagctcccaaggatgtctatgtctcaatggagctgattgaaatgcatc |
51030673 |
T |
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| Q |
221 |
taattctgtgttttctatgaaatgtttaacatcacttggcatcttctctaacttgtttaacacatattgttttagcttagcagg |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51030674 |
taattctgtgttttctatgaaatgtttaacatcacttggcatcttctctaacttgtttaacacatattgttttagcttagcagg |
51030757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 21 - 304
Target Start/End: Original strand, 51063226 - 51063509
Alignment:
| Q |
21 |
tttggtttcttcgaaaaggcctcggctaaacaccttgctaaaaccactccatcctctaaagcagaacaccccccttgaccaagatcaggtgtcatagggt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51063226 |
tttggtttcttcgaaaaggcctcggctaaacaccttgctaaaaccactccatcctctaaagcagaacaccccccttgaccaagatcaggtgtcatagggt |
51063325 |
T |
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| Q |
121 |
gtaaagcatctccagcaacacaaacattgcctttactaatatttcccatcataagctcccaaggatgtctatgtctcaatggagctgattgaaatgcatc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51063326 |
gtaaagcatctccagcaacacaaacattgcctttactaatatttcccatcataagctcccaaggatgtctatgtctcaatggagctgattgaaatgcatc |
51063425 |
T |
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| Q |
221 |
taattctgtgttttctatgaaatgtttaacatcacttggcatcttctctaacttgtttaacacatattgttttagcttagcagg |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51063426 |
taattctgtgttttctatgaaatgtttaacatcacttggcatcttctctaacttgtttaacacatattgttttagcttagcagg |
51063509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 36 - 304
Target Start/End: Original strand, 51068810 - 51069078
Alignment:
| Q |
36 |
aaggcctcggctaaacaccttgctaaaaccactccatcctctaaagcagaacaccccccttgaccaagatcaggtgtcatagggtgtaaagcatctccag |
135 |
Q |
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|||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51068810 |
aaggcctcagctagacaccttgctaaaaccaccccatcctctaaagcagaacaccccccttgaccaagatcaggtgtcatagggtgtaaagcatctccag |
51068909 |
T |
|
| Q |
136 |
caacacaaacattgcctttactaatatttcccatcataagctcccaaggatgtctatgtctcaatggagctgattgaaatgcatctaattctgtgttttc |
235 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| || || |||||||| ||||| ||||| |
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| T |
51068910 |
caacacaaacatttcctttactaatatttcccattataagctcccaaggatgtctatatctcaatggagctgaatggaaagcatctaaatctgttttttc |
51069009 |
T |
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| Q |
236 |
tatgaaatgtttaacatcacttggcatcttctctaacttgtttaacacatattgttttagcttagcagg |
304 |
Q |
| |
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||||| | | |||||| ||||||||| ||||||| |||||||||||||||||| || || |||||||| |
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| T |
51069010 |
tatgatagatataacattacttggcatattctctagcttgtttaacacatattgcttcagtttagcagg |
51069078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 21 - 304
Target Start/End: Original strand, 51034752 - 51035035
Alignment:
| Q |
21 |
tttggtttcttcgaaaaggcctcggctaaacaccttgctaaaaccactccatcctctaaagcagaacaccccccttgaccaagatcaggtgtcatagggt |
120 |
Q |
| |
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||||||||||| ||||| |||| |||| ||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| ||||| ||| |||| |
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| T |
51034752 |
tttggtttcttggaaaatacctcacctaagcaccttgctaaaaccaccccatcctctaaagcacaacaccccccttgggcaagataaggtgccattgggt |
51034851 |
T |
|
| Q |
121 |
gtaaagcatctccagcaacacaaacattgcctttactaatatttcccatcataagctcccaaggatgtctatgtctcaatggagctgattgaaatgcatc |
220 |
Q |
| |
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| ||||||||||||||||||||||||||| ||||||||| |||||||| || || |||||||||||||||| ||||||||||||||| || || ||||| |
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| T |
51034852 |
gcaaagcatctccagcaacacaaacattgtttttactaatgtttcccattatgagttcccaaggatgtctatatctcaatggagctgaatgtaaagcatc |
51034951 |
T |
|
| Q |
221 |
taattctgtgttttctatgaaatgtttaacatcacttggcatcttctctaacttgtttaacacatattgttttagcttagcagg |
304 |
Q |
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||| | ||||||||||||| | | |||||| |||||| |||| ||||| |||| ||||||||||||||||||| |||||||| |
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| T |
51034952 |
taaattagtgttttctatgataaatctaacataacttggaatctcctctagcttgcttaacacatattgttttagtttagcagg |
51035035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 45 - 301
Target Start/End: Complemental strand, 40618162 - 40617906
Alignment:
| Q |
45 |
gctaaacaccttgctaaaaccactccatcctctaaagcagaacaccccccttgaccaagatcaggtgtcatagggtgtaaagcatctccagcaacacaaa |
144 |
Q |
| |
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||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||| ||||| |||||||||||| ||| ||||||||| |
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| T |
40618162 |
gctaagcaccttgctaataccaccccatcttctaaagcagaacaccccccttgggcaagatcaggtgccatagagtgtaaagcatcaccaacaacacaaa |
40618063 |
T |
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| Q |
145 |
cattgcctttactaatatttcccatcataagctcccaaggatgtctatgtctcaatggagctgattgaaatgcatctaattctgtgttttctatgaaatg |
244 |
Q |
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|||| ||||| |||||||||||||| || |||||||| |||| ||||| ||||||||||||||| || || ||||||| || ||||||||||||||| |
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| T |
40618062 |
catttcctttgctaatatttcccattatgagctcccatggatttctatatctcaatggagctgaatggaaagcatctatctcagtgttttctatgaaaga |
40617963 |
T |
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| Q |
245 |
tttaacatcacttggcatcttctctaacttgtttaacacatattgttttagcttagc |
301 |
Q |
| |
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| |||||||||||||||| ||||||||||| ||||| ||||||| ||| || ||||| |
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| T |
40617962 |
tctaacatcacttggcattttctctaacttctttaatacatattctttcagtttagc |
40617906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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