View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10429_high_16 (Length: 225)
Name: NF10429_high_16
Description: NF10429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10429_high_16 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 5299869 - 5299657
Alignment:
| Q |
11 |
cagagagaaaagaaaaatatcatggcagaattggttggtggagcatttctttcatcattctttcaagtggctcttgagaaattgtcttccaatgatttca |
110 |
Q |
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| T |
5299869 |
cagaaagaaaagaaaaat--catggcagaattggttggtggagcatttctttcatcattctttcaagtggctcttgagaaattgtcttccaatgatttca |
5299772 |
T |
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| Q |
111 |
tagactattttcgtcgaggcaaacttgacgatacactgctagagaaacttcaagttacactcaattctatcaaccatgtactcgaagaagcggagacaaa |
210 |
Q |
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| T |
5299771 |
tagactattttcgtcgaggcaaacttgacgataaactgctacagaaacttcaagttacactcaattctatcaaccatgtactcgaagaagcggagacaaa |
5299672 |
T |
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| Q |
211 |
gcaataccaaagctc |
225 |
Q |
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| T |
5299671 |
gcaataccaaagctc |
5299657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 31 - 223
Target Start/End: Original strand, 4387852 - 4388044
Alignment:
| Q |
31 |
catggcagaattggttggtggagcatttctttcatcattctttcaagtggctcttgagaaattgtcttccaatgatttcatagactattttcgtcgaggc |
130 |
Q |
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| T |
4387852 |
catggcagagttggttggtggagcgtttctttcatcattctttcaggtggctcttgagaaattgtcttccaatgatttcattgactattttcgtggaagc |
4387951 |
T |
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| Q |
131 |
aaacttgacgatacactgctagagaaacttcaagttacactcaattctatcaaccatgtactcgaagaagcggagacaaagcaataccaaagc |
223 |
Q |
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| T |
4387952 |
aaacttgatgataaactgctagagaaacttctaataacactcaattctatcaaccgtgtgttggaagaagcggagatgaagcagtaccaaagc |
4388044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 41 - 223
Target Start/End: Complemental strand, 5251279 - 5251097
Alignment:
| Q |
41 |
ttggttggtggagcatttctttcatcattctttcaagtggctcttgagaaattgtcttccaatgatttcatagactattttcgtcgaggcaaacttgacg |
140 |
Q |
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| T |
5251279 |
ttggttggtggagcgtttctttcatcattctttcaagtggctcttgagaaattgtcttccaatgatttcattgactatttccgtagaagcaaacttgatg |
5251180 |
T |
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| Q |
141 |
atacactgctagagaaacttcaagttacactcaattctatcaaccatgtactcgaagaagcggagacaaagcaataccaaagc |
223 |
Q |
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| T |
5251179 |
ttaatctgctggagaaacttctaataacactcaattctatcaaccatgtgttggaagaagcggagatgaagcaataccaaagc |
5251097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 31 - 223
Target Start/End: Complemental strand, 5269176 - 5268984
Alignment:
| Q |
31 |
catggcagaattggttggtggagcatttctttcatcattctttcaagtggctcttgagaaattgtcttccaatgatttcatagactattttcgtcgaggc |
130 |
Q |
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| T |
5269176 |
catggcagagttagttggtggagcatttctttcatcattttttcaagtggctcttgagaaattgtcttccaatgatttcattgactatttccgtagaagc |
5269077 |
T |
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| Q |
131 |
aaacttgacgatacactgctagagaaacttcaagttacactcaattctatcaaccatgtactcgaagaagcggagacaaagcaataccaaagc |
223 |
Q |
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| T |
5269076 |
aaacttgatgtcaatctgctagagaaacttctaataacactcaattctatcaaccatgtgttggaagaagctgagatgaagcagttccaaagc |
5268984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 8472642 - 8472589
Alignment:
| Q |
25 |
aaatatcatggcagaattggttggtggagcatttctttcatcattctttcaagt |
78 |
Q |
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| T |
8472642 |
aaatatcatggcagagttgattggtggagcatttctttcatcattctttcaagt |
8472589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 6479025 - 6479078
Alignment:
| Q |
168 |
cactcaattctatcaaccatgtactcgaagaagcggagacaaagcaataccaaa |
221 |
Q |
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| T |
6479025 |
cactcaattctatcaaccatgtgctggaagaagcagagataaagcagtaccaaa |
6479078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 6837832 - 6837880
Alignment:
| Q |
26 |
aatatcatggcagaattggttggtggagcatttctttcatcattctttc |
74 |
Q |
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| T |
6837832 |
aatatcatggcagagctggttggcggagcagttctttcgtcattctttc |
6837880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 6572244 - 6572307
Alignment:
| Q |
26 |
aatatcatggcagaattggttggtggagcatttctttcatcattctttcaagtggctcttgaga |
89 |
Q |
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| T |
6572244 |
aatatcatggcagagctgattgctggagcatttctttcgtcgttctttcaagtcactcttgaga |
6572307 |
T |
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