View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10429_high_6 (Length: 465)
Name: NF10429_high_6
Description: NF10429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10429_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 35 - 454
Target Start/End: Original strand, 39402975 - 39403387
Alignment:
| Q |
35 |
tacccactttctatgctcatgcttcatcattcaggtgcacaatttggttgtttggatattagttttaaagatagtaatttgtctcaaacttatggactaa |
134 |
Q |
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| T |
39402975 |
tacccactttctatgctcatgcttcattattcgggtgcacaatttggttgtttggatattagttttaaagatagtaatttgtctgaaacttatggactaa |
39403074 |
T |
|
| Q |
135 |
aatacaacacacaaaatttgtaatttgattcaattgaagaattttatttagcttcttttagatgaaaaaatctccttgacctatcatggtggacctactt |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39403075 |
aatacaacacacaaaatttgtaatttgattcaattgaagaattttatttagcttcttttagatgaaaaaatctccttgacctatcatggtggacctactt |
39403174 |
T |
|
| Q |
235 |
actaaaaataagtttgtgtgaaagaagagagtc-tttttatctgtttccatatttgtgaactgtgagtctgtgaccacatgaaaattggaccactaatgt |
333 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39403175 |
actaaaaataagtttgtgtgaaagaagagagtcttttttatctgtttccatatttgtgaa--------ttgtgaccacatgaaaattggaccactaatgt |
39403266 |
T |
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| Q |
334 |
ctaatgggatatctcaaaatactattcatttgtacatacaatcatgatgcaaaaatgtgattattctccgcaccgtcccacatctggcgatgtcaacatt |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39403267 |
ctaatgggatatctcaaaatactattcatttgtacatacaatcatgatgcaaaaatgtgattattctctgcaccgtcccacatctggcgatgtcaacatt |
39403366 |
T |
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| Q |
434 |
catcaccaatttacgattcat |
454 |
Q |
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| T |
39403367 |
catcaccaatttacgattcat |
39403387 |
T |
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