View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10429_high_9 (Length: 266)
Name: NF10429_high_9
Description: NF10429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10429_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 37275371 - 37275467
Alignment:
| Q |
18 |
agatagataagcaaaggtgtagatagatattatttgtaggttagatattattttgaaggaataataatggaaatggtgtttgatgtgtgtgtatggt |
114 |
Q |
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| T |
37275371 |
agatagataagcaaaggtgtagatagatattatttgtaggttagatattattttgaaggaataataatggaaatggtgtttgatgtgtgtgtatggt |
37275467 |
T |
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Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 177 - 266
Target Start/End: Original strand, 37275530 - 37275619
Alignment:
| Q |
177 |
gatataatggaagtggggtcatgtccttttcctagtgaaaggaaaaggttaggactttccttttgttggtccctccctcacaaatacatt |
266 |
Q |
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| T |
37275530 |
gatataatggaagtggggtcatgtccttttcctagtgaaaggaaaaggttaggactttccttttgttggtccctccctcacaaatacatt |
37275619 |
T |
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