View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10429_low_1 (Length: 1154)
Name: NF10429_low_1
Description: NF10429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10429_low_1 |
 | |
|
| [»] scaffold0291 (4 HSPs) |
| | |
|
| [»] scaffold0305 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 1113; Significance: 0; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 1113; E-Value: 0
Query Start/End: Original strand, 19 - 1139
Target Start/End: Original strand, 7915097 - 7916217
Alignment:
| Q |
19 |
ggaaatgtgtcaaactcttcgtcaagttcatctggatgaacagactctgcccatgagagtttagtatccatgtgaggtggttgtctcggacgaaaccgat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915097 |
ggaaatgtgtcaaactcttcgtcaagttcatctggatgaacagactctgcccatgagagtttagtatccatgtgaggtggttgtctcggacgaaaccgat |
7915196 |
T |
|
| Q |
119 |
agttccataagccaatcaagaacatgtagagaaaacatgttggtagtatcaattctggataccataccaatatcaaaaagaggatgtgaactagtattga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915197 |
agttccataagccaatcaagaacatgtagagaaaacatgttggtagtatcaattctggataccataccaatatcaaaaagaggatgtgaactagtattga |
7915296 |
T |
|
| Q |
219 |
tgtaatgtgattcttccagtgacaaacatcattgaaccatcttccgattgtgatcaaaccggagaaaagggacatcacacgaaagaagttagctttgctt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915297 |
tgtaatgtgattcttccagtgacaaacatcattgaaccatcttccgattgtgatcaaaccggagaaaagggacatcacacgaaagaagttagctttgctt |
7915396 |
T |
|
| Q |
319 |
cttctcatgctccatatattggaatcaacatccagcatgtactcaacaatttccttcctgagtggcggttcagctctaccaagcctcattgcaacaatat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915397 |
cttctcatgctccatatattggaatcaacatccagcatgtactcaacaatttccttcctgagtggcggttcagctctaccaagcctcattgcaacaatat |
7915496 |
T |
|
| Q |
419 |
tcattgcttggtaccttaagttgtcaatttgattaactgcgaaaggttgtaaataatgcatctttgggagtaaaggttggccataaatatgaaacatgtt |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915497 |
tcattgcttggtaccttaagttgtcaatttgattaactgtgaaaggttgtaaataatgcatctttgggagtaaaggttggccataaatatgaaacatgtt |
7915596 |
T |
|
| Q |
519 |
agctagtgagagtgcagtgaacctcactgtgagttgaagctcacccattttcttaactccatgttggtgtaaaacaagaagtggataagaattggtgtaa |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915597 |
agctagtgagagtgcagtgaacctcactgtgagttgaagctcacccattttcttaactccatgttggtgtaaaacaagaagtggataagaattggtgtaa |
7915696 |
T |
|
| Q |
619 |
attttattggcttcaagtgttgatagcctaatccttacctttccaattcttgaatctttaattgaacttccactgggagctttttcacctaaatgacaat |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915697 |
attttattggcttcaagtgttgatagcctaatccttacctttccaattcttgaatctttaattgaacttccactgggagctttttcacctaaatgacaat |
7915796 |
T |
|
| Q |
719 |
tgtcaaaaacacctagtgttatgacagtgcaaggatcataaacttcccatgtgtattgctcattccatttgggactgaaagtgtctaaaagtgttcttgt |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915797 |
tgtcaaaaacacctagtgttatgacagtgcaaggatcataaacttcccatgtgtattgctcattccatttgggactgaaagtgtctaaaagtgttcttgt |
7915896 |
T |
|
| Q |
819 |
tctgatccatttctgaccatatttagcaacacagtatgcatctgtgctaccatgaccatccttcatcttcatagggagaagcccttttgctcctaagatg |
918 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915897 |
tctgatccatttctgaccatatttagcaacacagtatgcatctgtgctaccatgaccatccttcatcttcatagggagaagcccttttgctcctaagatg |
7915996 |
T |
|
| Q |
919 |
cccatctcaagtattccgataggctgcttccatagctgtcttgctgttggtctttgatcactaatgtacaaagtggattcatctaaaacatggtatccac |
1018 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915997 |
cccatctcaagtattccaataggctgcttccatagctgtcttgctgttggtctttgatcactaatgtacaaagtggattcatctaaaacatggtatccac |
7916096 |
T |
|
| Q |
1019 |
cttcaaggcaaactctaagatgaatcctacttgaaaatttctgctcatttcttctatcaccttcaagtgcaccaaaaccaaatttctcaaggctaaacca |
1118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7916097 |
cttcaaggcaaactctaagatgaatcctacttgaaaatttctgctcatttcttctatcaccttcaagtgcaccaaaaccaaatttctcaaggctaaacca |
7916196 |
T |
|
| Q |
1119 |
acgagaatgaaccggtctgtg |
1139 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
7916197 |
acgagaatgaaccggtctgtg |
7916217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 19 - 351
Target Start/End: Complemental strand, 7834206 - 7833874
Alignment:
| Q |
19 |
ggaaatgtgtcaaactcttcgtcaagttcatctggatgaacagactctgcccatgagagtttagtatccatgtgaggtggttgtctcggacgaaaccgat |
118 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| |||||||||| || ||| ||||||||||||||||||||||||| ||||||| |||||||| ||| |
|
|
| T |
7834206 |
ggaaatgtgtcaaactctccatcaagttcatcatgatgaacagattcagccgatgagagtttagtatccatgtgaggcggttgtcgaggacgaaattgat |
7834107 |
T |
|
| Q |
119 |
agttccataagccaatcaagaacatgtagagaaaacatgttggtagtatcaattctggataccataccaatatcaaaaagaggatgtgaactagtattga |
218 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||||||| || || ||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||| |
|
|
| T |
7834106 |
agtttcataagccaatcaaggacatgaagagaaatcaagtcggtagtatcaattctggataccatatcagtatcaaaaagaggatgtgaactagaattga |
7834007 |
T |
|
| Q |
219 |
tgtaatgtgattcttccagtgacaaacatcattgaaccatcttccgattgtgatcaaaccggagaaaagggacatcacacgaaagaagttagctttgctt |
318 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||||||||||| || || || ||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7834006 |
cgtgatgtgattcttccaatgacaaacatcattgaaccatcttccgatggtcattaatccgaaggaaagggacatcacacgaaagaagttagctttgctt |
7833907 |
T |
|
| Q |
319 |
cttctcatgctccatatattggaatcaacatcc |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
7833906 |
cttctcatgctccatatattggaatcaacatcc |
7833874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 1e-78
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 7832837 - 7833158
Alignment:
| Q |
19 |
ggaaatgtgtcaaactcttcgtcaagttcatctggatgaacagactctgcccatgagagtttagtatccatgtgaggtggttgtctcggacgaaaccgat |
118 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| ||||||||| | || ||||||||||||||||| ||||||| | ||| |||| |||| |||||||| |
|
|
| T |
7832837 |
ggaaatgtgtcaaacactttatcaagttcatcaggatgaacatattcagcccatgagagtttagtctccatgtaaagtgattgtggaggacaaaaccgat |
7832936 |
T |
|
| Q |
119 |
agttccataagccaatcaagaacatgtagagaa-aacatgttggtagtatcaattctggataccataccaatatcaaaaagaggatgtgaactagtattg |
217 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| || | ||||||||||||||||| |||||| | || | ||||||||||||||||||||||||||||| |
|
|
| T |
7832937 |
agttccataagccaatgaagaacttgtagagaagaaaaagttggtagtatcaattcaggatactacacaagtatcaaaaagaggatgtgaactagtattg |
7833036 |
T |
|
| Q |
218 |
atgtaatgtgattcttccagtgacaaacatcattgaaccatcttccgattgtgatcaaaccggagaaaagggacatcacacgaaagaagttagctttgct |
317 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||| || | ||||||||||||| |||||| |||||| | ||||||||||| ||| || |
|
|
| T |
7833037 |
atgtaatgtgattctttgaatgacaaacatcattgaaccatctcccaaatgtgatcaaaccgaagaaaaataacatcaagctaaagaagttaggtttcct |
7833136 |
T |
|
| Q |
318 |
tcttctcatgctccatatattg |
339 |
Q |
| |
|
| ||||||||||||||| |||| |
|
|
| T |
7833137 |
tgttctcatgctccataaattg |
7833158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 364 - 521
Target Start/End: Complemental strand, 7833747 - 7833590
Alignment:
| Q |
364 |
acaatttccttcctgagtggcggttcagctctaccaagcctcattgcaacaatattcattgcttggtaccttaagttgtcaatttgattaactgcgaaag |
463 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7833747 |
acaacttccttccaaagtggaggttcagctctacccagcctcattgctacaatattcgttgcttggtaccttaagttgtcaatttgattaactgtgaaag |
7833648 |
T |
|
| Q |
464 |
gttgtaaataatgcatctttgggagtaaaggttggccataaatatgaaacatgttagc |
521 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7833647 |
gttgtaaataatgcaactttgggagtaaaggttggccatatatatgaaacatgttagc |
7833590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 95; E-Value: 7e-46
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 7880291 - 7880440
Alignment:
| Q |
19 |
ggaaatgtgtcaaactcttcgtcaagttcatctggatgaacagactctgcccatgagagtttagtatccatgtgaggtggttgtctcggacgaaaccgat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||| || | ||||||||||||| ||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
7880291 |
ggaaatgtgtcaaactcttcgtcaagttcatcaggatgactagattcaggccatgagagttta-tatccatgtgaggcggttgtctcagacgaaaccgat |
7880389 |
T |
|
| Q |
119 |
agttccataagccaatcaagaacatgtagagaaaacatgttggtagtatca |
169 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| ||| ||||||||||||||| |
|
|
| T |
7880390 |
agttccataagccagtcaagaacatgcagaggaaaaatgttggtagtatca |
7880440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 435 - 570
Target Start/End: Original strand, 7882635 - 7882775
Alignment:
| Q |
435 |
taagttgtcaatttgattaactgcgaaaggttgtaaataatgcatctttgggagt-aaaggttggccataaatatgaaacatgttagctagtgagagtgc |
533 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
7882635 |
taagttgtcaatttgattaactgtgaaaggttgtaaataatgcatctttaggagtgaaaggttggccatagatatgaagaatgttagctagtgagagtgc |
7882734 |
T |
|
| Q |
534 |
agtgaacctcactgtgagttg----aagctcacccattttc |
570 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
7882735 |
tgtgaacctcagtgtgagttgaatcaagctcacccattttc |
7882775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 459 - 553
Target Start/End: Original strand, 7913557 - 7913651
Alignment:
| Q |
459 |
gaaaggttgtaaataatgcatctttgggagtaaaggttggccataaatatgaaacatgttagctagtgagagtgcagtgaacctcactgtgagtt |
553 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| |||| |||| |
|
|
| T |
7913557 |
gaaaggttctaaataatgcatcttttggagtaaaggttggccatacatatgaaaaatgttagctggtgagagtgcagtgaacctcgctgtaagtt |
7913651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 439 - 618
Target Start/End: Original strand, 7833156 - 7833337
Alignment:
| Q |
439 |
ttgtcaatttgattaactgcgaaaggttgtaaataatgcatctttgggagtaaaggttggccataaatatgaaacatgttagctagtgagagtgcagtga |
538 |
Q |
| |
|
|||| |||||||||||||| |||| |||||||||||| |||||||| || ||| ||| | ||| ||||||||||||||||| ||||| ||| ||| | |
|
|
| T |
7833156 |
ttgtaaatttgattaactgtgaaatgttgtaaataatatatctttggaagcgaagtttgacaatatatatgaaacatgttagcctgtgagtgtgtagtaa |
7833255 |
T |
|
| Q |
539 |
acc--tcactgtgagttgaagctcacccattttcttaactccatgttggtgtaaaacaagaagtggataagaattggtgtaa |
618 |
Q |
| |
|
|| || ||| |||||||| ||||| ||| |||| ||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7833256 |
ccccctcgctgcaagttgaagttcacctattctctttactccctgttggtgtaaaacaagaagtgaataagaattggtgtaa |
7833337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 824 - 955
Target Start/End: Original strand, 7833389 - 7833520
Alignment:
| Q |
824 |
tccatttctgaccatatttagcaacacagtatgcatctgtgctaccatgaccatccttcatcttcatagggagaagcccttttgctcctaagatgcccat |
923 |
Q |
| |
|
|||||| |||||||||||| | |||| |||||||||| ||||||||||| |||||||||| ||| |||| |||||||||||| |||||||||||| || |
|
|
| T |
7833389 |
tccattcctgaccatatttgggtacacggtatgcatctatgctaccatgaacatccttcattttcttaggcagaagccctttttatcctaagatgcctat |
7833488 |
T |
|
| Q |
924 |
ctcaagtattccgataggctgcttccatagct |
955 |
Q |
| |
|
||||||||||| ||||||||| || ||||| |
|
|
| T |
7833489 |
ttcaagtattccattaggctgctaccgtagct |
7833520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 298 - 352
Target Start/End: Original strand, 7880519 - 7880573
Alignment:
| Q |
298 |
cgaaagaagttagctttgcttcttctcatgctccatatattggaatcaacatcca |
352 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7880519 |
cgaaagaagttagcattgcttcttctcatgctcagtatattggaatcaacatcca |
7880573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 699 - 842
Target Start/End: Original strand, 7906611 - 7906758
Alignment:
| Q |
699 |
tttttcacctaaatgacaattgtcaaaaacacctag----tgttatgacagtgcaaggatcataaacttcccatgtgtattgctcattccatttgggact |
794 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| || ||| || |||| |||||||| ||||| ||| || ||||||| ||||| ||||||| | |
|
|
| T |
7906611 |
tttttcacctatatggcaattgtcaaaaacaaacagctgatgtcatcacagggcaaggatattaaacctcctatttgtattgttcatttaatttgggttt |
7906710 |
T |
|
| Q |
795 |
gaaagtgtctaaaagtgttcttgttctgatccatttctgaccatattt |
842 |
Q |
| |
|
|||| |||| |||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
7906711 |
gaaaatgtcgaaaagttttcttgtttagatccatttctgaccatattt |
7906758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 868 - 917
Target Start/End: Original strand, 7906801 - 7906849
Alignment:
| Q |
868 |
ccatgaccatccttcatcttcatagggagaagcccttttgctcctaagat |
917 |
Q |
| |
|
|||||||||||||||||||||||||| |||| | |||||||||||||||| |
|
|
| T |
7906801 |
ccatgaccatccttcatcttcataggcagaa-cacttttgctcctaagat |
7906849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 745 - 785
Target Start/End: Original strand, 21197795 - 21197835
Alignment:
| Q |
745 |
gtgcaaggatcataaacttcccatgtgtattgctcattcca |
785 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
21197795 |
gtgcaaggatcataaacttcccaagtatattgctcattcca |
21197835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 745 - 785
Target Start/End: Original strand, 27253637 - 27253677
Alignment:
| Q |
745 |
gtgcaaggatcataaacttcccatgtgtattgctcattcca |
785 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
27253637 |
gtgcaaggatcataaacttcccaagtatattgctcattcca |
27253677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 717 - 786
Target Start/End: Original strand, 11577425 - 11577494
Alignment:
| Q |
717 |
attgtcaaaaacacctagtgttatgacagtgcaaggatcataaacttcccatgtgtattgctcattccat |
786 |
Q |
| |
|
|||||||||||||| | ||| || |||||||| ||||||| ||| |||||||| || |||||||||||| |
|
|
| T |
11577425 |
attgtcaaaaacactaactgtgatcacagtgcatggatcatgaacctcccatgtatactgctcattccat |
11577494 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 1133
Target Start/End: Original strand, 8415535 - 8416664
Alignment:
| Q |
19 |
ggaaatgtgtcaaactcttcgtcaagttcatctggatgaacagactctgcccatgagagtttagtatccatgtgaggtggttgtctcggacgaaaccgat |
118 |
Q |
| |
|
|||||||| ||||||||||| || ||||| ||||||| | | || |||||||||||||||||||||||||||||||| | ||| |||||||| |||| |
|
|
| T |
8415535 |
ggaaatgtatcaaactcttcatcgagttcgtctggattagctccttcggcccatgagagtttagtatccatgtgaggtggatttcttggacgaaatcgat |
8415634 |
T |
|
| Q |
119 |
agttccataagccaatcaagaacatgtagagaaaacatgttggtagtatcaattctggataccataccaatatcaaaaagaggatgtgaactagtattga |
218 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| || || || ||||||||||||||| | | |||||| | || || ||||| ||||||| || |
|
|
| T |
8415635 |
agttccataaaccaattaagaacatgtagagaaatatagtcggaagaatcaattctggatacaaaatcaatattaggaatagaatgtgtactagtaccga |
8415734 |
T |
|
| Q |
219 |
tgtaatgtgattcttccagtgacaaacatcattgaaccatcttccgattgtgatcaaaccggagaaaagggacatcacacgaaagaagttagctttgctt |
318 |
Q |
| |
|
||| | |||||||||| | ||||| | ||||||||| | || ||||||||| | || ||||| ||||||| ||||||||||| ||||||||| |
|
|
| T |
8415735 |
tgtgaccggattcttccaattgcaaacttggttgaaccatttccccattgtgatcgcgctagaaaaaagcgacatcatgcgaaagaagttggctttgctt |
8415834 |
T |
|
| Q |
319 |
cttctcatgctccatatattggaatcaacatccagcatgtactcaacaatttccttcctgagtggcggttcagctctaccaagcctcattgcaacaatat |
418 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| | |||||||||||| || ||||| || || ||||| |||||||| |||||||| || || |||| |
|
|
| T |
8415835 |
cttctcatgctccacatatgtgaatcaacatctaacatgtactcaactgcctctttcctaagaggaggttcggctctacctagcctcatagctacgatat |
8415934 |
T |
|
| Q |
419 |
tcattgcttggtaccttaagttgtcaatttgattaactgcgaaaggttgtaaataatgcatctttgggagtaaaggttggccataaatatgaaacatgtt |
518 |
Q |
| |
|
|||| |||||||||||||| || |||| ||||||||||| ||| || |||||||||||||||||| || |||||||| |||||||||| || |||||| |
|
|
| T |
8415935 |
tcatcgcttggtaccttaaattttcaacttgattaactgtgaagggacttaaataatgcatctttggaagcaaaggttgtccataaatataaaccatgtt |
8416034 |
T |
|
| Q |
519 |
agctagtgagagtgcagtgaacctcactgtgagttgaagctcacccattttcttaactccatgttggtgtaaaacaagaagtggataagaattggtgtaa |
618 |
Q |
| |
|
||||| ||| || | ||||||||| | || ||||||||||||||||||||||| || |||| ||| || |||||||||||||||||||| || |||||| |
|
|
| T |
8416035 |
agctattgaaagagtagtgaaccttattgctagttgaagctcacccattttcttgacaccattttgatgcaaaacaagaagtggataagagtttgtgtaa |
8416134 |
T |
|
| Q |
619 |
attttattggcttcaagtgttgatagcctaatccttacctttccaattcttgaatctttaattgaa---ctt---ccactgggagcttttt--------- |
703 |
Q |
| |
|
||| |||| |||||||||||||| ||||||||||| |||||||| || |||||||| || || | ||| ||||| |||||||||| |
|
|
| T |
8416135 |
attctattagcttcaagtgttgagagcctaatcctaacctttccgatccttgaatccctagctgcattgcttccaccactaggagctttttctcctccac |
8416234 |
T |
|
| Q |
704 |
cacctaaatgacaattgtcaaaaacacctagtgttatgacagtgcaaggatcataaacttcccatgtgtattgctcattccatttgggactgaaagtgtc |
803 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
8416235 |
cacctaaatggcaattatcaaaaactcctagtgttattacagtgcaaggatcataaacttcccatgtgtattgttcattccatttaggactaaaagtgtc |
8416334 |
T |
|
| Q |
804 |
taaaagtgttcttgttctgatccatttctgaccatatttagcaacacagtatgcatctgtgctaccatgaccatccttcatcttcatagggagaagccct |
903 |
Q |
| |
|
| || ||||| ||||||||||||||||||||||| || || || ||||| ||||| ||||| ||| | | || ||||||||||| || |||||| | |
|
|
| T |
8416335 |
aagaatagttctagttctgatccatttctgaccatacttggctacgcagtacgcatcggtgcttccacggctattgttcatcttcattggaagaagcttt |
8416434 |
T |
|
| Q |
904 |
tttgctcctaagatgcccatctcaagtattccgataggctgcttccatagctgtcttgctgttggtctttgatcactaatgtacaaagtggattcatcta |
1003 |
Q |
| |
|
| |||||||||||| || | ||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||| |
|
|
| T |
8416435 |
tgtgctcctaagatccctacttcaagcattcctataggctgcttccatagctgtctagctgttggtctatgatcacttgcatacaaagttgattcatcta |
8416534 |
T |
|
| Q |
1004 |
aaacatggtatccaccttcaaggcaaactctaagatgaatcctacttgaaaatttctgctcatttcttctatcaccttcaagtgcaccaaaaccaaattt |
1103 |
Q |
| |
|
| |||||||| |||||||| ||||||| ||| | |||||||| ||||||||||| ||| ||||||||||||||||| | |||||||| |||| |
|
|
| T |
8416535 |
agacatggtaaccaccttcgaggcaaattctcatgtgaatcctgcttgaaaatttaacctcgtttcttctatcaccttccatcattccaaaaccgtattt |
8416634 |
T |
|
| Q |
1104 |
ctcaaggctaaaccaacgagaatgaaccgg |
1133 |
Q |
| |
|
|||||| | ||||| |||||||||||||| |
|
|
| T |
8416635 |
ctcaagattgaaccatcgagaatgaaccgg |
8416664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 60; Significance: 5e-25; HSPs: 4)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 704 - 863
Target Start/End: Original strand, 3586 - 3745
Alignment:
| Q |
704 |
cacctaaatgacaattgtcaaaaacacctagtgttatgacagtgcaaggatcataaacttcccatgtgtattgctcattccatttgggactgaaagtgtc |
803 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||| || ||||||||||||| |||||||||||||||||| ||||||||||| ||| | ||| | || |
|
|
| T |
3586 |
cacctaaatgacaattgtcaaaaacaccaaaagttataactgtgcaaggatcatgaacttcccatgtgtattgttcattccattttggattaaaactctc |
3685 |
T |
|
| Q |
804 |
taaaagtgttcttgttctgatccatttctgaccatatttagcaacacagtatgcatctgt |
863 |
Q |
| |
|
| |||||||||||| | ||||||| ||||||||| || ||||| || |||||||| |
|
|
| T |
3686 |
agtgattgttcttgttctaacccatttcataccatattttgctacacaataagcatctgt |
3745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 943 - 1058
Target Start/End: Original strand, 3825 - 3940
Alignment:
| Q |
943 |
tgcttccatagctgtcttgctgttggtctttgatcactaatgtacaaagtggattcatctaaaacatggtatccaccttcaaggcaaactctaagatgaa |
1042 |
Q |
| |
|
||||||||||| ||||| || |||| |||| |||||| || |||| ||||||||||| | |||||| || |||||||||| ||||||||||| |||| |
|
|
| T |
3825 |
tgcttccatagttgtctagcagttgttcttgtatcacttatatacattgtggattcatcaagaacatgataagcaccttcaagacaaactctaaggtgaa |
3924 |
T |
|
| Q |
1043 |
tcctacttgaaaattt |
1058 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
3925 |
tcctacttgagaattt |
3940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 428
Target Start/End: Original strand, 3186 - 3304
Alignment:
| Q |
310 |
gctttgcttcttctcatgctccatatattggaatcaacatccagcatgtactcaacaatttccttcctgagtggcggttcagctctaccaagcctcattg |
409 |
Q |
| |
|
|||||||||||||| | |||||||||| ||||| ||||| |||||||||||||| | ||| ||||| || || ||||| ||||| || ||||||| || |
|
|
| T |
3186 |
gctttgcttcttcttaaactccatatatgtgaatccacatcaagcatgtactcaactacttctttcctaagaggtggttctgctcttcctagcctcactg |
3285 |
T |
|
| Q |
410 |
caacaatattcattgcttg |
428 |
Q |
| |
|
| || |||||||| ||||| |
|
|
| T |
3286 |
ctacgatattcatagcttg |
3304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 3015 - 3093
Alignment:
| Q |
139 |
aacatgtagagaaaacatgttggtagtatcaattctggataccataccaatatcaaaaagaggatgtgaactagtattg |
217 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||| |||| || || ||||| || | ||||||||||||| |
|
|
| T |
3015 |
aacatgtagagaaaaattgttggtaggatcaattctggataacatattaagatgaaaaaaagaacatgaactagtattg |
3093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 745 - 786
Target Start/End: Complemental strand, 9529027 - 9528986
Alignment:
| Q |
745 |
gtgcaaggatcataaacttcccatgtgtattgctcattccat |
786 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9529027 |
gtgcaaggatcataaacatcccatgtgtattgctcattccat |
9528986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 709 - 785
Target Start/End: Original strand, 13632 - 13708
Alignment:
| Q |
709 |
aaatgacaattgtcaaaaacacctagtgttatgacagtgcaaggatcataaacttcccatgtgtattgctcattcca |
785 |
Q |
| |
|
||||||||||| ||||| ||||| | ||| || ||||| ||||||||| |||| ||||| || |||||||||||||| |
|
|
| T |
13632 |
aaatgacaattatcaaatacaccaattgtaatcacagtacaaggatcaaaaacctcccaagtatattgctcattcca |
13708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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