View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10429_low_2 (Length: 696)
Name: NF10429_low_2
Description: NF10429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10429_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 673; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 1 - 677
Target Start/End: Original strand, 9451573 - 9452249
Alignment:
| Q |
1 |
aaactaacagtgtatttttatttagtttggtttatatcctccagatttctattacagttaatccaaacaaaacaagttttgtgacaattgaaatcattta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9451573 |
aaactaacagtgtatttttatttagtttggtttatatcctccagatttctattacagttaatccaaacaaaacaagttttgtgacaattgaaatcattta |
9451672 |
T |
|
| Q |
101 |
tacaacattgtatacaaatatgcttttatgtatacaatatgcaacttctgcgaaaattgaaatgatttatacatagttgatatttattataacatatttc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9451673 |
tacaacattgtatacaaatatgcttttatgtatacaatatgcaacttctgcgaaaattgaaatgatttatacatagttgatatttattataacatatttc |
9451772 |
T |
|
| Q |
201 |
tacggttaatccaaacacaacaagttttgtgttgaacaaaatgacataacagtcaagccatctcttgcactttctccttccctttgtcgtcatccttttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9451773 |
tacggttaatccaaacacaacaagttttgtgttgaacaaaatgacataacagtcaagccatctcttgcactttctccttccctttgtcgtcatccttttt |
9451872 |
T |
|
| Q |
301 |
cttgttaaatgggaaaggtctaaaccctttttgaagcaatttctcaacctcctcaaactgaaggcctttggtttcaggcactaacaaataaatggctaca |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9451873 |
cttgttaaatgggaaaggtctaaaccctttttgaagcaatttctcaacctcctcaaactgaaggcctttggtttcaggcactaacaaataaatggctaca |
9451972 |
T |
|
| Q |
401 |
aggccaatcaaagagaaccctgcaaagaggaggaatgttccggtagttcctagagcctttatcatgctcaagaatgactcactcacaattagattagcac |
500 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9451973 |
aggccaatcaaagagaaccctgcaaagaggaggaatgttccggtagttcctagagcctttatcatgctcaagaatgactcactcacaattagattggcac |
9452072 |
T |
|
| Q |
501 |
accagttgaaaactgctgctatacctccacctattcctctgaaccgcaatggataaatctccgagtttagaacccaaggcactgttccaattccaggagc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9452073 |
accagttgaaaactgctgctatacctccacctattcctctgaaccgcaatggataaatctccgagtttagaacccaaggcactgttccaattccaggagc |
9452172 |
T |
|
| Q |
601 |
atatgctatgatgtatagtccaaggattacaactgcaaggattccaattctgcttggacaaccttgggaaaaccata |
677 |
Q |
| |
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| T |
9452173 |
atatgctatgatgtatagtccaaggattacaactgcaaggattccaattctgcttggacaaccttgggaaaaccata |
9452249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 220 - 677
Target Start/End: Original strand, 9440567 - 9441023
Alignment:
| Q |
220 |
acaagttttgtgttgaacaaaatgacataacagtcaagccatctcttgcactttctccttccctttgtcgtcatcctttttcttgttaaatgggaaaggt |
319 |
Q |
| |
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||||||| ||| |||||||||| ||||||||| |||||| || | || ||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9440567 |
acaagttgtgtcttgaacaaaa-gacataacaatcaagctatgtgtttcacttcctccttccctttgtcatcatcctttttcttgttaaatgggaaaggt |
9440665 |
T |
|
| Q |
320 |
ctaaaccctttttgaagcaatttctcaacctcctcaaactgaaggcctttggtttcaggcactaacaaataaatggctacaaggccaatcaaagagaacc |
419 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
9440666 |
ctaaaccctttctgaagcaatttctcaacctcctcaaactgaagacctttggtttcaggcaccaacaaataaatggctacaaatccaatcaaagagaacc |
9440765 |
T |
|
| Q |
420 |
ctgcaaagaggaggaatgttccggtagttcctagagcctttatcatgctcaagaatgactcactcacaattagattagcacaccagttgaaaactgctgc |
519 |
Q |
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|||||||| |||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
9440766 |
ctgcaaaggtgaggaatgttccagtagttcctagagtctttatcatgcttaagaatgactcactcataattacattagcacaccagttgaaaactgctgc |
9440865 |
T |
|
| Q |
520 |
tatacctccacctattcctctgaaccgcaatggataaatctccgagtttagaacccaaggcactgttccaattccaggagcatatgctatgatgtatagt |
619 |
Q |
| |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| |
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|
| T |
9440866 |
tatacctccacctattcctctgaaccttaaaggataaatctccgagtttagaacccaaggcactgttccgattccaggagcatatgatattatgtatagt |
9440965 |
T |
|
| Q |
620 |
ccaaggattacaactgcaaggattccaattctgcttggacaaccttgggaaaaccata |
677 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
9440966 |
ccaaggattacaactgcaaggattccaattctgcttggacaaccttgagaaaaccata |
9441023 |
T |
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