View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10429_low_24 (Length: 213)
Name: NF10429_low_24
Description: NF10429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10429_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 32148610 - 32148426
Alignment:
| Q |
17 |
agttctcccggtcacaaaagatgtcgctaccacaaaccaatacaaagctcaaatcaaccaaagaacaccactagttccactgaacgtcattgtcgatctc |
116 |
Q |
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| T |
32148610 |
agttctcccagtcacaaaagatgtcgctaccacaaaccaatacaaagctcaaatcaaccaaagaacaccactagtcccactgaacatcatcgtcgatctc |
32148511 |
T |
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| Q |
117 |
ggtggcctgtttctctgggttgattgcgaaaaccagtacatttcctccacataccgccctgcacggtgtcgctctgccctatgct |
201 |
Q |
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| T |
32148510 |
ggtggcctgtttctctgggttgattgcgaaaaccagtacatttcctccacataccgtcctgcacggtgtcgctctgcccaatgct |
32148426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 32139219 - 32139056
Alignment:
| Q |
18 |
gttctcccggtcacaaaagatgtcgctaccacaaaccaatacaaagctcaaatcaaccaaagaacaccactagttccactgaacgtcattgtcgatctcg |
117 |
Q |
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| T |
32139219 |
gttctcccaatcacaaaagatggggccacaacaaaccaatacaaagctcaaatcaaccagagaaccccattagtcccactgaacgtcatcgtcgatctcg |
32139120 |
T |
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| Q |
118 |
gtggcctgtttctctgggttgattgcgaaaaccagtacatttcctccacataccgccctgcacg |
181 |
Q |
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| T |
32139119 |
gtggccagtttctttgggttgactgcgaaaacaaatacatttcttccacataccgccctgcacg |
32139056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 32127424 - 32127250
Alignment:
| Q |
27 |
gtcacaaaagatgtcgctaccacaaaccaatacaaagctcaaatcaaccaaagaacaccactagttccactgaacgtcattgtcgatctcggtggcctgt |
126 |
Q |
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| T |
32127424 |
gtcacaaaagatagcgcaacaacactccaatacatagctcaaattaaccaaagaaccccactagtcccactaaaccttgtcgttgatcttggcggcaaat |
32127325 |
T |
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| Q |
127 |
ttctctgggttgattgcgaaaaccagtacatttcctccacataccgccctgcacggtgtcgctctgccctatgct |
201 |
Q |
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|||||||||| || || |||||||| |||| |||||||||||||||||||| |||||| | ||| |||| ||||| |
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| T |
32127324 |
ttctctgggtcgactgtgaaaaccactacacttcctccacataccgccctgtacggtgcccctccgcccaatgct |
32127250 |
T |
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