View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10429_low_3 (Length: 647)
Name: NF10429_low_3
Description: NF10429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10429_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 460; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Original strand, 5252677 - 5253193
Alignment:
| Q |
1 |
tttaggcgactaggggcggactgcaataaaagctgaacttcaaacagaccgaaaatggactactgagaacatggannnnnnnagtagtgagggagaagtg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5252677 |
tttaggcgactaggggcggactgcaataaaagctgaacttcaaacagaccgaaaatggactactgagaacatggatttttttagtagtgagggagaagta |
5252776 |
T |
|
| Q |
101 |
aaaagtaagaagtcagatcactcaatcaccatagatgtcttggagcccccatagatgttgatgcagattgttttagcaaataaaatgagcttcagcttgt |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5252777 |
aaaagtaagaagtcagaccactcaatcaccatagatgtcttggaggccccatagatgttgatgcagattgttttagcaaataaaatgagcttcagcttgt |
5252876 |
T |
|
| Q |
201 |
ggtaaaattcacagattagagtttcttcttggcaggcatatatcatatcattcaggactaaagaagcttgctaaactagatcgaagaccgttctgtccaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || |
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| T |
5252877 |
ggtaaaattcacagattagagtttcttcttggcaggcatatatcatatcattcaggactaaagaagctttctaaactagatcgaagacgtttctgtcgaa |
5252976 |
T |
|
| Q |
301 |
tttgttataagacatttaaatgctataactcatagtatggttagaattgttatagtaattcagggtctagaacttgggtgagaatggccctagaaaaatt |
400 |
Q |
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| T |
5252977 |
tttgttataagacatttaaattctataactcatagtatggttagaattgttatagtaattcagggtctagaacttgggtgagaatggccctagaaaaatt |
5253076 |
T |
|
| Q |
401 |
caatcaactttatgtactaatttgttttcaatttaatgaaatctgctactcgttgttaaaagaaagaccttcaactaagacacaacggtctgccgcattt |
500 |
Q |
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| T |
5253077 |
caatcaactttatgtactaatttgttttcaatttaatgaaatctgctactggttgttaaaagaaagaccttcaactaagacacaacggtctgccgcattt |
5253176 |
T |
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| Q |
501 |
ttaatagaaatcaattt |
517 |
Q |
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||||||||||||||||| |
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| T |
5253177 |
ttaatagaaatcaattt |
5253193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 521 - 629
Target Start/End: Original strand, 5253386 - 5253494
Alignment:
| Q |
521 |
tgagggatagtcaatttttatgaaannnnnnnnnatctcttattgttgagtgacattaatatatttttcaaataaacattgagtctattttcacttttac |
620 |
Q |
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| T |
5253386 |
tgagggatagtcaatttttatgaaaataaattatatctcttattgttgagtgacattaatatatttttcaaataaacattgagtctattttcacttttac |
5253485 |
T |
|
| Q |
621 |
agaatatgg |
629 |
Q |
| |
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||||||||| |
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| T |
5253486 |
agaatatgg |
5253494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 239 - 345
Target Start/End: Complemental strand, 5439750 - 5439644
Alignment:
| Q |
239 |
tatatcatatcattcaggactaaagaagcttgctaaactagatcgaagaccgttctgtccaatttgttataagacatttaaatgctataactcatagtat |
338 |
Q |
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|||||| ||||||||| |||| ||||| ||||||| | || |||||||| ||||||||||| |||||| || |||||| ||||||||| || || |||| |
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| T |
5439750 |
tatatcctatcattcaaaactacagaagtttgctaagcaaggtcgaagacagttctgtccaaattgttaaaaaacatttcaatgctatagctgatggtat |
5439651 |
T |
|
| Q |
339 |
ggttaga |
345 |
Q |
| |
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||||||| |
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| T |
5439650 |
ggttaga |
5439644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 268 - 342
Target Start/End: Original strand, 5100164 - 5100238
Alignment:
| Q |
268 |
ttgctaaactagatcgaagaccgttctgtccaatttgttataagacatttaaatgctataactcatagtatggtt |
342 |
Q |
| |
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|||||||||||| | |||||| || ||||||||||||||| ||||||| | |||| |||||||||||||| |||| |
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| T |
5100164 |
ttgctaaactaggttgaagactgtcctgtccaatttgttaaaagacatatgaatgttataactcatagtacggtt |
5100238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 5427385 - 5427325
Alignment:
| Q |
197 |
ttgtggtaaaattcacagattagagtttcttcttggcaggcatatatcatatcattcagga |
257 |
Q |
| |
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| T |
5427385 |
ttgtggtaaaattgataaatcagagtttcttcttggcagccatatatcctatcattcagga |
5427325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 198 - 269
Target Start/End: Complemental strand, 5352079 - 5352008
Alignment:
| Q |
198 |
tgtggtaaaattcacagattagagtttcttcttggcaggcatatatcatatcattcaggactaaagaagctt |
269 |
Q |
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| T |
5352079 |
tgtggtaaaattgacaaatcagagtttcttcttggcagtcatatatgctatcattcatgagtacagaagctt |
5352008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 334
Target Start/End: Original strand, 5135438 - 5135504
Alignment:
| Q |
268 |
ttgctaaactagatcgaagaccgttctgtccaatttgttataagacatttaaatgctataactcata |
334 |
Q |
| |
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| T |
5135438 |
ttgctaaactaggttgaagactgtcctgtccaatttgttagaagacatatgaatgttataactcata |
5135504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 5100409 - 5100467
Alignment:
| Q |
218 |
agagtttcttcttggcaggcatatatcatatcattcaggactaaagaagcttgctaaac |
276 |
Q |
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|||||||||||||||||| ||||||| ||| ||| ||||||| ||||| ||||||||| |
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| T |
5100409 |
agagtttcttcttggcagctatatatcctattatttaggactacagaagtttgctaaac |
5100467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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