View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10429_low_5 (Length: 532)
Name: NF10429_low_5
Description: NF10429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10429_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 22 - 312
Target Start/End: Original strand, 11733650 - 11733940
Alignment:
| Q |
22 |
cttgaaatcctgccacacaaaaacaataaaaatcataacaaatccatgtcaattcataatcatttaaatttatctactaaataacaatactaattcattc |
121 |
Q |
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| T |
11733650 |
cttgaaatcctgccacacaaaaacaataaaaatcataacaaatccatgtcaattcataatcatttaaatttacctactaaataacaatactaattcattc |
11733749 |
T |
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| Q |
122 |
caatcggtagaattcataggaaacaacacaaattcaacattgataaaaaagaaataggatgaataagcnnnnnnnctcacagcataaaacggaaaaatta |
221 |
Q |
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| T |
11733750 |
caatcggtagaattcataggaaacaacacaaattcaacattgataaaaaagaaataggatgaataagcaaaaaaactcacagcataaaacggaaaaatta |
11733849 |
T |
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| Q |
222 |
ccttgcaagcaatcataattttctcgaaaacaacaccagttcaacatttaatcatttaatatttgctactaaaaaacgatatttattcgta |
312 |
Q |
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| T |
11733850 |
ccttgcaagcaatcataattttctcgaaaacaacaccagttcaacatttaatcatttaatatttgctactaaaaaacgatatttattcgta |
11733940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 378 - 532
Target Start/End: Original strand, 11734006 - 11734160
Alignment:
| Q |
378 |
aatgaagctgccgacaaactcacaacataaaacgacacaatcgcaattctctaacaacacaactgcaattatctcaaaacaatacatattcaacatggct |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11734006 |
aatgaagctgccgacaaactcacaacataaaacgacacaatcgcaattctctaacaacacaactgcaattatctcaaaacaatacatattcaacatggct |
11734105 |
T |
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| Q |
478 |
aaaaacaaaaaggatgaatttataaccaaacttaccttgcaagcaatcacaattc |
532 |
Q |
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| T |
11734106 |
aaaaacaaaaaggatgaatttataaccaaacttaccttgcaagcaatcacaattc |
11734160 |
T |
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