View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10429_low_6 (Length: 483)
Name: NF10429_low_6
Description: NF10429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10429_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 41920307 - 41919982
Alignment:
| Q |
18 |
aaacttaccttgtttctgataatctccaagaccatttttcggaaaagattggctggtccacaagaccaacgatgctgttggtaacggtaggccttgaaag |
117 |
Q |
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| T |
41920307 |
aaacttaccttgtttctaataatctccaagaccatttttcggaaaagattggctggtccacaagaccaacgatgctgttggtaacggtaggccttgaaag |
41920208 |
T |
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| Q |
118 |
tactcggcagttcatttttaacctgtattcaaaataaatacctaaaatcagtgaccaattaataatataaactcaatccatttcatatatttatttgtta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41920207 |
tactcggcagttcatttttaacctgtattcaaaataaatacctaaaatcagtgaccaattaataatataaactcaatccatttcatatatttatttgtta |
41920108 |
T |
|
| Q |
218 |
tagcattctannnnnnnncttttcaaatcaatactttaacaacaaaacctgaatcatggttcaactgttttaaaccgcttaaacatgataaagattcaat |
317 |
Q |
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| T |
41920107 |
tagcattctattttttttcttttcaaatcaatactttaacaacaaaacctgaatcatggttcaactgttttaaaccgcttaaacatgataaagattcaat |
41920008 |
T |
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| Q |
318 |
tgaaacatttaaataaccgaacctta |
343 |
Q |
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|||| ||||||||||||||||||||| |
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| T |
41920007 |
tgaaccatttaaataaccgaacctta |
41919982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 336 - 473
Target Start/End: Complemental strand, 41919952 - 41919815
Alignment:
| Q |
336 |
gaaccttatgattcggttccttttttaaaacatctttaattatgaatattttaaaaatccaagattgaattattgagtttgaaataattatgaaagtgga |
435 |
Q |
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| T |
41919952 |
gaaccatatgattcggttcgttttttaaaacatctttaattatgaatattttaaaaatccaagattgaattattgagtttgaaataattatgaaagtgga |
41919853 |
T |
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| Q |
436 |
ccttcaagtttgacaagtataagaacttccatcctttg |
473 |
Q |
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| T |
41919852 |
ccttcaagtttgacaagtataagaacttccaccctttg |
41919815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 26831029 - 26831149
Alignment:
| Q |
21 |
cttaccttgtttctgataatctccaagaccatttttcggaaaagattggctggtccacaagaccaacgatgctgttggtaacggtaggccttgaaagtac |
120 |
Q |
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|||||||||||| ||| |||||||| |||||||||| ||||||||||||||||||||| ||||| ||||| |||||||| | |||| || || |||| |
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| T |
26831029 |
cttaccttgtttgtgacaatctccattaccatttttctgaaaagattggctggtccacatgaccatcgatgttgttggtacctaaaggcttttaatgtac |
26831128 |
T |
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| Q |
121 |
tcggcagttcatttttaacct |
141 |
Q |
| |
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| |||| ||| |||||||||| |
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| T |
26831129 |
ttggcaattcgtttttaacct |
26831149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 26784309 - 26784428
Alignment:
| Q |
22 |
ttaccttgtttctgataatctccaagaccatttttcggaaaagattggctggtccacaagaccaacgatgctgttggtaacggtaggccttgaaagtact |
121 |
Q |
| |
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||||||||||| ||| |||||||| | |||||| | |||||||||||| |||||||| ||||| ||||| |||||||| | ||||| || |||||||| |
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| T |
26784309 |
ttaccttgtttgtgagaatctccataatcattttcctgaaaagattggccggtccacatgaccatcgatgttgttggtatctataggcatttaaagtact |
26784408 |
T |
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| Q |
122 |
cggcagttcatttttaacct |
141 |
Q |
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|||| |||||||||||||| |
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| T |
26784409 |
gggcaattcatttttaacct |
26784428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 26817385 - 26817504
Alignment:
| Q |
22 |
ttaccttgtttctgataatctccaagaccatttttcggaaaagattggctggtccacaagaccaacgatgctgttggtaacggtaggccttgaaagtact |
121 |
Q |
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|||||||| |||| | |||||||| ||||||||| || ||||||||||| ||||| ||||| ||||| |||||||| | || ||||| || ||||| |
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| T |
26817385 |
ttaccttgcttctaagaatctccatagccatttttctaaagagattggctggcccacatgaccatcgatgttgttggtacctataagccttaaatgtact |
26817484 |
T |
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| Q |
122 |
cggcagttcatttttaacct |
141 |
Q |
| |
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|||| |||||||||||||| |
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| T |
26817485 |
tggcaattcatttttaacct |
26817504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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