View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10429_low_7 (Length: 465)
Name: NF10429_low_7
Description: NF10429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10429_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 35 - 454
Target Start/End: Original strand, 39402975 - 39403387
Alignment:
| Q |
35 |
tacccactttctatgctcatgcttcatcattcaggtgcacaatttggttgtttggatattagttttaaagatagtaatttgtctcaaacttatggactaa |
134 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39402975 |
tacccactttctatgctcatgcttcattattcgggtgcacaatttggttgtttggatattagttttaaagatagtaatttgtctgaaacttatggactaa |
39403074 |
T |
|
| Q |
135 |
aatacaacacacaaaatttgtaatttgattcaattgaagaattttatttagcttcttttagatgaaaaaatctccttgacctatcatggtggacctactt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39403075 |
aatacaacacacaaaatttgtaatttgattcaattgaagaattttatttagcttcttttagatgaaaaaatctccttgacctatcatggtggacctactt |
39403174 |
T |
|
| Q |
235 |
actaaaaataagtttgtgtgaaagaagagagtc-tttttatctgtttccatatttgtgaactgtgagtctgtgaccacatgaaaattggaccactaatgt |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39403175 |
actaaaaataagtttgtgtgaaagaagagagtcttttttatctgtttccatatttgtgaa--------ttgtgaccacatgaaaattggaccactaatgt |
39403266 |
T |
|
| Q |
334 |
ctaatgggatatctcaaaatactattcatttgtacatacaatcatgatgcaaaaatgtgattattctccgcaccgtcccacatctggcgatgtcaacatt |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39403267 |
ctaatgggatatctcaaaatactattcatttgtacatacaatcatgatgcaaaaatgtgattattctctgcaccgtcccacatctggcgatgtcaacatt |
39403366 |
T |
|
| Q |
434 |
catcaccaatttacgattcat |
454 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
39403367 |
catcaccaatttacgattcat |
39403387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University