View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10429_low_9 (Length: 381)
Name: NF10429_low_9
Description: NF10429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10429_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 176 - 363
Target Start/End: Original strand, 29105960 - 29106147
Alignment:
| Q |
176 |
gcatatgatacagaacaagataagctcaacataataccaccacggatctcaatatattttttcaataaataaataagccaaaattaaaaaagtggagatt |
275 |
Q |
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| T |
29105960 |
gcatatgatacagaacaagataagctcaacataataccaccacggatctcaatatattttttcaataaataaataaaagaaaattaaaaaagtggagatt |
29106059 |
T |
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| Q |
276 |
cctattccattcccatgtgttcacaaacagcaaaaattgcactgaaaaacttcactgagttagaagcaacaagaactaacgctaatta |
363 |
Q |
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| T |
29106060 |
cctattccattcccatgtgtttacaaacagcaaaaattgcactgaaaaacttcactgagttagaagcaacaagaactaacgctaatta |
29106147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 29105769 - 29105886
Alignment:
| Q |
1 |
aataaaatagtagtagtagacataaagttttgggatcagactgacgtgcnnnnnnn-taattcatcacaccagagctggcgcctctgtttgaatctttgg |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29105769 |
aataaaatagtagtagtagacataaagttttgggatcagactgacgtgcaaaaaaaataattcatcacaccagagctggcgcctctgtttgaatctttgg |
29105868 |
T |
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| Q |
100 |
catcattttccattactc |
117 |
Q |
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| T |
29105869 |
catcatttcccattactc |
29105886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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