View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10430_low_10 (Length: 261)
Name: NF10430_low_10
Description: NF10430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10430_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 3653235 - 3653449
Alignment:
| Q |
14 |
caaagggtagacaaagccttacatgaatataatgtaacgacatttcacgtcaaaattttcacgcctttactcttcaaatcagttctgctttccattttaa |
113 |
Q |
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| T |
3653235 |
caaagggtaaacaaaaccttacatgaatataatgtaacgacatttcacgtcaaaagtttcacgcctttactcttcaaatcagttctgctttccattttaa |
3653334 |
T |
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| Q |
114 |
gtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctttcactatatctccgtcatcgctactacgtgttgatcctccactgtc |
213 |
Q |
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| T |
3653335 |
gcggcagtggagcagagaacagaatcttctcttggtgtgcttgaaactactctttcactatatctccgtcatcgctactacgtgttgatcctccactgtc |
3653434 |
T |
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| Q |
214 |
ctccaccagcacttc |
228 |
Q |
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| T |
3653435 |
ctccaccagaacttc |
3653449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 3659501 - 3659715
Alignment:
| Q |
14 |
caaagggtagacaaagccttacatgaatataatgtaacgacatttcacgtcaaaattttcacgcctttactcttcaaatcagttctgctttccattttaa |
113 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3659501 |
caaagggtagacaaagccttacatgaatataatgtaatgacatttcacgtcaaaattttcacgcctttactcttcaaatcagttctgctttccattttaa |
3659600 |
T |
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| Q |
114 |
gtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctttcactatatctccgtcatcgctactacgtgttgatcctccactgtc |
213 |
Q |
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| T |
3659601 |
gtggcaatggagcagagaacagaatcttctcttggtgtgc---------------cactatatctccgtcatcgctactacgtgttgatcctccactgtc |
3659685 |
T |
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| Q |
214 |
ctccaccagcacttcctcgtcatcttcaac |
243 |
Q |
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| T |
3659686 |
ccccaccagcacttcctcgtcatcttcaac |
3659715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 68 - 209
Target Start/End: Original strand, 3649181 - 3649322
Alignment:
| Q |
68 |
attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctt |
167 |
Q |
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|||||||| | |||||||||||||||||||||||||||||| |||||||||||| || | |||| ||||| |||||| || ||| | |||||||| |||| |
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| T |
3649181 |
attttcacacttttactcttcaaatcagttctgctttccatcttaagtggcaatagaactgagagcagaagcttctcatgatgtacctgaaactgatctt |
3649280 |
T |
|
| Q |
168 |
tcactatatctccgtcatcgctactacgtgttgatcctccac |
209 |
Q |
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| T |
3649281 |
tcactcaatctccataaccactactacgcgttgatcctccac |
3649322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 228
Target Start/End: Original strand, 3657323 - 3657452
Alignment:
| Q |
99 |
tgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctttcactatatctccgtcatcgctactacgtgt |
198 |
Q |
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|||| ||||||||||| ||||||| ||| |||||||||| |||||| || ||| | |||||||||||||||| | |||||| | | | || ||||| || |
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| T |
3657323 |
tgctctccattttaagcggcaatgcagctgagaacagaagcttctcatgatgtacctgaaactgctctttcagtcaatctccataaccactgctacgcgt |
3657422 |
T |
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| Q |
199 |
tgatcctccactgtcctccaccagcacttc |
228 |
Q |
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| T |
3657423 |
tgatccttcaccgtcctccaccagcacttc |
3657452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 36164576 - 36164634
Alignment:
| Q |
68 |
attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagc |
126 |
Q |
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|||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
36164576 |
attttcacacttttactcttcaaatcagttctgctttccatcttaagcggcaatggagc |
36164634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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