View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10430_low_11 (Length: 255)
Name: NF10430_low_11
Description: NF10430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10430_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 55301528 - 55301406
Alignment:
| Q |
19 |
tttcctacatttgggggtccttcaaatataaaatgattacagccacacccacctttaacctatatacgcagcaattacaaaagaaattatattacctatg |
118 |
Q |
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| T |
55301528 |
tttcctacatttgggggtccttcaaatataaaatgattacagccacacccacctttaacctatatacgcagcaattacaaaagaaattatattacctatg |
55301429 |
T |
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| Q |
119 |
ttgggcatgcagttgtgatcttg |
141 |
Q |
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| T |
55301428 |
ttgggcatgcagttgtgatcttg |
55301406 |
T |
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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 55301351 - 55301299
Alignment:
| Q |
196 |
cgaagcatcatattcttcttaccaatgctttcagctgaagtgctttatctctg |
248 |
Q |
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| T |
55301351 |
cgaagcatcatattcttcttaccaatgctttcagctgaagtgctttatctctg |
55301299 |
T |
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