View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10430_low_12 (Length: 240)
Name: NF10430_low_12
Description: NF10430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10430_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 27 - 225
Target Start/End: Complemental strand, 32618062 - 32617867
Alignment:
| Q |
27 |
atctagaaatgttgttgcatgaaagttgaatggagtttttgtcccttcatcgatctgaaaacaaagaaaagagacacaggtatgtaaactatggaaatta |
126 |
Q |
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| T |
32618062 |
atctagaaatgttgttgcatgaaagttgaatggagtttttgtcccttcatcgatctgaaaacaaagaaaagagacacaggtatgtaaactatgggaatta |
32617963 |
T |
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| Q |
127 |
ctaaatctttaattggtttgatacatcaatcctcaacaaaataataaatgactcatttcagtattaatttcttgcaggaaacagaatatggtgatagtt |
225 |
Q |
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| T |
32617962 |
ctaaatctctaattggtttaatacatcaatcctcaacaaa---ataaatgactcatttcagtattaatttcttgcaggaaacagaatatggtgatagtt |
32617867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 203
Target Start/End: Original strand, 3593769 - 3593941
Alignment:
| Q |
27 |
atctagaaatgttgttgcatgaaagttgaatggagtttttgtcccttcatcgatctgaaaacaaa-gaaaagagacacaggtatgtaaactatggaaatt |
125 |
Q |
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||||||||||||| ||||| || |||||| ||||||| ||||| ||||| || || || |||| ||||||||||||| ||| |||||||||| |||| |
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| T |
3593769 |
atctagaaatgttattgcaggatagttgattggagttcttgtc--ttcattgaactacaatcaaaagaaaagagacacaagtaagtaaactatgagaatt |
3593866 |
T |
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| Q |
126 |
actaaatctttaattggtttgatacatcaatcctcaacaaaataataaatgactcatttcagtattaatttcttgcag |
203 |
Q |
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| T |
3593867 |
actaaattactaattggtttaagacataaatcatcaacaa---aataaataactcatttcgatattaatttcttgcag |
3593941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 207
Target Start/End: Original strand, 21445871 - 21445965
Alignment:
| Q |
110 |
gtaaactatggaaattactaaatctttaattggtttgatacatcaatcctcaacaaaataataaatgactcatttcagtattaatttcttgcaggaaa |
207 |
Q |
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|||||||||| ||||||||||| ||||| |||| | |||| ||||||||||||||||| || ||||||||| |||||||||||||||||||| |
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| T |
21445871 |
gtaaactatgagaattactaaattactaattcgtttaagacataaatcctcaacaaaataa---ataactcatttcgatattaatttcttgcaggaaa |
21445965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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