View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10430_low_15 (Length: 221)
Name: NF10430_low_15
Description: NF10430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10430_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 18490583 - 18490390
Alignment:
| Q |
13 |
aagaagataatcttcatctttggagagtgcaacaccattggcaaaggccaaatgatcaaggacaataacggtttcatttgacaatggattgtaccttaaa |
112 |
Q |
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| T |
18490583 |
aagaagataatcttcatctttggagagtgcaacaccattggcaaaggccaaatgatcaaggacaataacggtttcatttgacaatggattgtaccttaaa |
18490484 |
T |
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| Q |
113 |
agttgtccatgtggtcttgcctcaagcacatccaaataccaattgtgcataccaaatttggtacttggaatagtgaaatatatatttccatctg |
206 |
Q |
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| T |
18490483 |
agttgtccatgtgatcttgcctcaagcacatccaaataccaattgtgcataccaaatttggtacttggaacactgaaataaatatttccatctg |
18490390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 18509081 - 18508891
Alignment:
| Q |
16 |
aagataatcttcatctttggagagtgcaacaccattggcaaaggccaaatgatcaaggacaataacggtttcatttgacaatggattgtaccttaaaagt |
115 |
Q |
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| T |
18509081 |
aagataatcttcatctttggagagtgcaacaccattggcaaaggccaaatgatcaaggacaataacggtttcatttgacaatggattgtaccttaaaagt |
18508982 |
T |
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| Q |
116 |
tgtccatgtggtcttgcctcaagcacatccaaataccaattgtgcataccaaatttggtacttggaatagtgaaatatatatttccatctg |
206 |
Q |
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| T |
18508981 |
tgtccatgtggtcttgcctcaagcacatctagataccaattgtgtaaaccaaatttggtacttggtacactgaaatatatatttccatctg |
18508891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 18515229 - 18515042
Alignment:
| Q |
19 |
ataatcttcatctttggagagtgcaacaccattggcaaaggccaaatgatcaaggacaataacggtttcatttgacaatggattgtaccttaaaagttgt |
118 |
Q |
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| T |
18515229 |
ataatcttcatccttggacagtgcaacaccatttgcaaatgtcaaattatcaatgacaataactgtctcatttaacgtgggattatactttaaaagttgt |
18515130 |
T |
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| Q |
119 |
ccatgtggtcttgcctcaagcacatccaaataccaattgtgcataccaaatttggtacttggaatagtgaaatatatatttccatctg |
206 |
Q |
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| T |
18515129 |
ccatgaggtcttgcctctagcaaatccaaataccaatcgtgtaaaccaaatttgttactaccaacactgaagtatatatttccatctg |
18515042 |
T |
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